New model in OGS2.0 | DPOGS201964  |
---|---|
Genomic Position | scaffold79:- 227362-228244 |
See gene structure | |
CDS Length | 393 |
Paired RNAseq reads   | 322 |
Single RNAseq reads   | 1132 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010544 (5e-65) |
Best Drosophila hit   | muscle protein 20, isoform B (2e-41) |
Best Human hit | calponin-2 isoform a (3e-19) |
Best NR hit (blastp)   | muscular protein 20 [Bombyx mori] (5e-65) |
Best NR hit (blastx)   | muscular protein 20 [Bombyx mori] (3e-64) |
GeneOntology terms    | GO:0005509 calcium ion binding GO:0043292 contractile fiber GO:0003779 actin binding GO:0008360 regulation of cell shape GO:0007155 cell adhesion GO:0007520 myoblast fusion |
InterPro families    | IPR001715 Calponin homology domain IPR000557 Calponin repeat IPR003096 Smooth muscle protein/calponin |
Orthology group | MCL17576 |
Nucleotide sequence:
ATGAACAGGCTGCAGCCGGGCATAATCTCCAAAATCAATGTCTCTGGCGGTGACTATAAA
TTCATGGACAATATTAGCCAATTCCAAAAAGCCTGCGTAAAGTACGGTGTACCAGACGTA
GACCTTTTCCAATCTACTGATCTTTGGGACCAGAAAAATATTTCCCTAGTCACACAAACA
ATTTTCGCTATTGGCAGAACGACACACAAGCATCCTGAATGGCGTGGCCCGTGGTTAGGC
CCTAAACCCGCTGAAGAAAACCGACGGGAATTCAGCGAAGATGTTCTCCGAGCGGGAGAA
TCCGTGATCGGTCTACAGGCTGGTACAAACAAATTGGCATCACAGTCCGGACAAAACTTC
GGTGCTTCGAGAAAGATCATACTCGGCAAGTGA
Protein sequence:
MNRLQPGIISKINVSGGDYKFMDNISQFQKACVKYGVPDVDLFQSTDLWDQKNISLVTQT
IFAIGRTTHKHPEWRGPWLGPKPAEENRREFSEDVLRAGESVIGLQAGTNKLASQSGQNF
GASRKIILGK