| New model in OGS2.0 | DPOGS203722 |
|---|---|
| Genomic Position | scaffold3101:- 10915-17599 |
| See gene structure | |
| CDS Length | 558 |
| Paired RNAseq reads | 0 |
| Single RNAseq reads | 3 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003529 (8e-77) |
| Best Drosophila hit | nicotinic acetylcholine receptor alpha 34E, isoform F (3e-36) |
| Best Human hit | neuronal acetylcholine receptor subunit alpha-7 isoform 1 precursor (3e-34) |
| Best NR hit (blastp) | nicotinic acetylcholine receptor subunit alpha 5 isoform B [Bombyx mori] (8e-79) |
| Best NR hit (blastx) | nicotinic acetylcholine receptor subunit alpha 5 isoform B [Bombyx mori] (1e-79) |
| GeneOntology terms | GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0045211 postsynaptic membrane GO:0006811 ion transport GO:0042166 acetylcholine binding GO:0016021 integral to membrane |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR002394 Nicotinic acetylcholine receptor IPR006201 Neurotransmitter-gated ion-channel |
| Orthology group | MCL18268 |
Nucleotide sequence:
ATGGGAAAGTATGACGCCTCAGTGCGCCCTGTGGAGAACTCCTCCCACCCCCTCCTCGTG
ACCTTCGGCGTCTCACTGCATCACATCATCGACGTGGAAGAAAAAGATCAACTGTTGACA
ACCAACTGTTGGATAACCCAAATATGGACAGATCACCATTTACGGTGGAATGTTAGCGAT
TTTGATGGAATCAACGTTATAAGAATACCATACGAAAGAGTCTGGAAGCCGGATATAATC
TTATATAATAACGCGGATCCCAACTACCGATCAGCTGTTATCAACACTAATGTAATAGTG
AAGAACACTGGTGAGGTGACGTGGTTGAGCCACGGTATATATGTGTCCGTATGCGACATC
AACGTGGAACAATTCCCCTTTGATATCCAGCTCTGCACCATGAAGTGGGCTTCATGGACC
TACGATGGCTTTCAGAGCCTAGCTGTGGTCAAATTGCTGCAGCTCGAACATGGGTTGGCT
CGATCGGGGAAGTACTACCATCTCCCAGAAAATCGGGGTGAAGTAGCCTTAAATGGCTGC
GTTTTATCCGATAAATGA
Protein sequence:
MGKYDASVRPVENSSHPLLVTFGVSLHHIIDVEEKDQLLTTNCWITQIWTDHHLRWNVSD
FDGINVIRIPYERVWKPDIILYNNADPNYRSAVINTNVIVKNTGEVTWLSHGIYVSVCDI
NVEQFPFDIQLCTMKWASWTYDGFQSLAVVKLLQLEHGLARSGKYYHLPENRGEVALNGC
VLSDK