New model in OGS2.0 | DPOGS201615  |
---|---|
Genomic Position | scaffold4174:+ 16589-17884 |
See gene structure | |
CDS Length | 1296 |
Paired RNAseq reads   | 642 |
Single RNAseq reads   | 1376 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012204 (0.0) |
Best Drosophila hit   | CG13126 (3e-79) |
Best Human hit | protein RSM22 homolog, mitochondrial isoform 2 (1e-63) |
Best NR hit (blastp)   | hypothetical protein AaeL_AAEL003822 [Aedes aegypti] (2e-98) |
Best NR hit (blastx)   | hypothetical protein AaeL_AAEL003822 [Aedes aegypti] (6e-95) |
GeneOntology terms    | GO:0005507 copper ion binding GO:0006412 translation GO:0008168 methyltransferase activity |
InterPro families   | IPR015324 Ribosomal protein Rsm22, bacterial-type |
Orthology group | MCL14876 |
Nucleotide sequence:
ATGCTCAGAAAACTAAGGCCGATATTTTCTACATTCAACGTCAAATTCTCCACACGTTTA
GAAATAGATCCGAATCTCCGGGATAGGTTCGAATCAGACCAATATAAGCCAAGGAATCAT
CCCGGCAGGTCGAGAGTTAAGATCGCTAAAATACCGAATGAAATACAGAACGCTATAAAA
ATCATCTTACAAGACAGCGGCGCAAAAAGTTATTACGAGGAGAGTGTGAAGTTAAATAAC
TATCTCATATCAAGACATTTACCCCCGGAAGAAAATGAAATAACAGAAAAAGCAGCAAAA
ATACACAGGAATGTATCGAAGAGGTATTCAAAACAGAACGGCGATATGAACCTGGCGGAA
GATAAGATTAAGACAACAGTTTTTAATATATTAAAAAAAAACGTCTACCGCTGGGCAAAC
ATAGCGTACGACCAACCAACTAGCTTGCAATACTTGATGGCGAGAGCGGCTCCGGAATAC
GCGGTGCTCGTTAGAATATTAGATGAAATAAATAGGCAGCTGCCAGATTACAAGCCGAGG
AGTTTCTTTGATTTCGGATCAGGGGTCGGTACAGGAACTTGGGCTGTGAACACTTACTGG
AAAGGCGATATATTTGAATACTTTACTGTGGACACATCCACACATATGAACGACTTAGCC
CAGCTCATTTTATGCCAAGGTCGTGATAATGTTGAAATGCCATTCAAAGCTTACTTCCAA
AGACAATTCCTGCCAGCTTCAACTGATCTGAAGTACCACATAGTGCTGTCAGCTTTCACA
TTATTCGAAATGCCCGATATGAAGAGCCGTCTAGAAACTATACAGAAGCTTTGGAATAAG
ACTGAAGATTTTTTAATAATTGTCGAACATGGTAGCAATGCTGGCTTCAGGGTTGTGAAT
GAGGCGAGAGAATTCGTTTTGAATTCCACACAACAAGACCAGGGTTATGCATTTGCTCCG
TGTCCTAACGACAATGTATGCCCTCGGTATTTAGAGCACCAGACGCCTTGTAACTTCCTA
ATGAAGTATGAGACATTGCCGTTCCCTTCAAAAAGCGAAGTTATGGCTGAGTTATTCTCG
TATGTTATTTTAAGGAAAGGTGCGAGACCGTCCAATGATCCCGGTTGGCCGAGGGTGGTT
AGGGCTCCAATAGTGAGATCAGGCCACACTATTTGTAGAATGTGCACGGCACAGGGTGAA
TTAGAGGAAGTGATTTTCTCAAAAGCCAAATATGATCAGAAAACTTACCGATGTGCCAGA
TCTTGCAACTGGGGTGATCTGCTGCCCGTCAAATAA
Protein sequence:
MLRKLRPIFSTFNVKFSTRLEIDPNLRDRFESDQYKPRNHPGRSRVKIAKIPNEIQNAIK
IILQDSGAKSYYEESVKLNNYLISRHLPPEENEITEKAAKIHRNVSKRYSKQNGDMNLAE
DKIKTTVFNILKKNVYRWANIAYDQPTSLQYLMARAAPEYAVLVRILDEINRQLPDYKPR
SFFDFGSGVGTGTWAVNTYWKGDIFEYFTVDTSTHMNDLAQLILCQGRDNVEMPFKAYFQ
RQFLPASTDLKYHIVLSAFTLFEMPDMKSRLETIQKLWNKTEDFLIIVEHGSNAGFRVVN
EAREFVLNSTQQDQGYAFAPCPNDNVCPRYLEHQTPCNFLMKYETLPFPSKSEVMAELFS
YVILRKGARPSNDPGWPRVVRAPIVRSGHTICRMCTAQGELEEVIFSKAKYDQKTYRCAR
SCNWGDLLPVK