| New model in OGS2.0 | DPOGS212904 |
|---|---|
| Genomic Position | scaffold12941:+ 114-970 |
| See gene structure | |
| CDS Length | 453 |
| Paired RNAseq reads | 141 |
| Single RNAseq reads | 802 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011888 (2e-21) |
| Best Drosophila hit | alpha catenin (5e-31) |
| Best Human hit | catenin alpha-1 (4e-28) |
| Best NR hit (blastp) | PREDICTED: similar to actin binding [Tribolium castaneum] (8e-49) |
| Best NR hit (blastx) | PREDICTED: similar to actin binding [Tribolium castaneum] (4e-34) |
| GeneOntology terms | GO:0005915 zonula adherens GO:0016342 catenin complex GO:0007016 cytoskeletal anchoring at plasma membrane GO:0008092 cytoskeletal protein binding GO:0003779 actin binding GO:0030720 oocyte localization involved in germarium-derived egg chamber formation GO:0005912 adherens junction GO:0005914 spot adherens junction GO:0030055 cell-substrate junction GO:0007155 cell adhesion GO:0045296 cadherin binding GO:0007163 establishment or maintenance of cell polarity GO:0005198 structural molecule activity GO:0015629 actin cytoskeleton GO:0005913 cell-cell adherens junction GO:0005886 plasma membrane |
| InterPro families | IPR006077 Vinculin/alpha-catenin IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site |
| Orthology group | ND |
Nucleotide sequence:
GTGATAAACGCGGGTAGGGTGCTCGCCGCGCGCTGCAGGTCGCGGGTGGCCCAGGAGAAC
GCGTCGGCCTTCGCTCGCGCCTGGGAGGCCGCGGTGCGTCTGCTCACAGACGCGGTGGAC
GACATCACCACCATCGACGACTTCCTCGCCGTCAGCGAGAACCACATCCTGGAGGACGTC
AACAAGTGCGTGGTGGCGCTGCAGGAGGCCGACCCTGACGGACTCGAGAGGACCGCAGCC
GCTATACGGGGCAGGGCTACCAGGGTCTGCTCGGTGGTGACTCAGGAGATGGACAACTAC
GAGCCCTGCATATACACCAAGAGAGTGTTGGAAGCCGTCACCGTGCTCAGAGACCAGGGT
GAGTCCTTGTTACTGATGCTTATTCCGTGTCACCGGATGTTCCTTATAGCTTCTAGATTG
TACGAAATACCATTTGTTACCGAACGTTACTGA
Protein sequence:
VINAGRVLAARCRSRVAQENASAFARAWEAAVRLLTDAVDDITTIDDFLAVSENHILEDV
NKCVVALQEADPDGLERTAAAIRGRATRVCSVVTQEMDNYEPCIYTKRVLEAVTVLRDQG
ESLLLMLIPCHRMFLIASRLYEIPFVTERY