New model in OGS2.0 | DPOGS201540  |
---|---|
Genomic Position | scaffold3443:+ 16459-21972 |
See gene structure | |
CDS Length | 906 |
Paired RNAseq reads   | 579 |
Single RNAseq reads   | 2333 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002716 (8e-135) |
Best Drosophila hit   | CG5009 (1e-85) |
Best Human hit | peroxisomal acyl-coenzyme A oxidase 1 isoform a (1e-65) |
Best NR hit (blastp)   | PREDICTED: similar to acyl-CoA oxidase [Tribolium castaneum] (5e-112) |
Best NR hit (blastx)   | PREDICTED: similar to acyl-CoA oxidase [Tribolium castaneum] (2e-109) |
GeneOntology terms    | GO:0016401 palmitoyl-CoA oxidase activity GO:0055114 oxidation reduction GO:0003995 acyl-CoA dehydrogenase activity GO:0006635 fatty acid beta-oxidation GO:0050660 FAD binding GO:0005777 peroxisome |
InterPro families    | IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR023570 Acyl-CoA oxidase, peroxisomal IPR009100 Acyl-CoA dehydrogenase/oxidase |
Orthology group | ND |
Nucleotide sequence:
ATGGTGTCTAATAAAATAAACGCCGATTTACAAAAAGAAAGGGATTCTTGTAGTTTTAAT
GTCACCGAATTAACAAACTTAATTGATGGAGGTATTGAGAAAACTGCCGAAAGGAAGAAA
AGAGAGGAAATGGCTCTCAAAGAAGGTATACATTTGGACGAAGTTCCGTCTGTGTATTTG
AGTCACAAGGAGAAATATGAGTTAGCGATCAAGAAAGCCTGCCTCCTGTTTAAAATGATA
AGACGACTTCAGGAAGAGGAAAATGCTGGCATGGAAAATTATATGGCAGTGCTTGGAGGT
AATTTAGGGTCGGCCATTCTTGGGGATGGATCCCCTCTCACCCTCCACTATGTAATGTTC
ATACCCACATTGATGGGACAGGGTACAGTGGAACAGCAGGCTTATTGGATCGGCAGAGCA
TTTAATCTTGACATCATTGGCACATACGCTCAGACTGAATTGGGTCATGGCACATTCGTC
CGCGGTCTTGAGACCACAGCCACCTACGATCCTTCTACTAAGGAGTTCATTCTACACAGC
CCCACACTCACCGCATACAAGTGGTGGCCAGGCGGACTGGCCCACACAGCCAACTACTGT
ATAGTTATGGCCCAACTGCACACGAAAGGCAAATGCCACGGCATGCACGCCTTCATAGTC
CAATTGCGTGATGAAGAAACACACATGCCCTTACCGGGGATTAAAGTTGGGGAGATCGGC
GCCAAGCTCGGTATGAACGGCACTAACAACGGATTCCTTGGCTTCGACCAAGTCAGAATA
CCCAGAGACTATATGCTAATGAAGAACGCTAAAGTTTTAGAGGTAATTATTTTTTTGTAC
CATAGTTTGAGGACGACCTTGATTTTTTTTCCGTTTTTTTTTTTTTGTACGCAATCATGC
AAATAA
Protein sequence:
MVSNKINADLQKERDSCSFNVTELTNLIDGGIEKTAERKKREEMALKEGIHLDEVPSVYL
SHKEKYELAIKKACLLFKMIRRLQEEENAGMENYMAVLGGNLGSAILGDGSPLTLHYVMF
IPTLMGQGTVEQQAYWIGRAFNLDIIGTYAQTELGHGTFVRGLETTATYDPSTKEFILHS
PTLTAYKWWPGGLAHTANYCIVMAQLHTKGKCHGMHAFIVQLRDEETHMPLPGIKVGEIG
AKLGMNGTNNGFLGFDQVRIPRDYMLMKNAKVLEVIIFLYHSLRTTLIFFPFFFFCTQSC
K