New model in OGS2.0 | DPOGS204318  |
---|---|
Genomic Position | scaffold10904:- 130-768 |
See gene structure | |
CDS Length | 369 |
Paired RNAseq reads   | 31 |
Single RNAseq reads   | 106 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007587 (6e-22) |
Best Drosophila hit   | XPG-like endonuclease (4e-32) |
Best Human hit | flap endonuclease GEN homolog 1 (2e-20) |
Best NR hit (blastp)   | PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium castaneum] (5e-37) |
Best NR hit (blastx)   | PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium castaneum] (4e-35) |
GeneOntology terms    | GO:0000737 DNA catabolic process, endonucleolytic GO:0000738 DNA catabolic process, exonucleolytic GO:0004520 endodeoxyribonuclease activity GO:0005634 nucleus GO:0008310 single-stranded DNA specific 3'-5' exodeoxyribonuclease activity GO:0008311 double-stranded DNA specific 3'-5' exodeoxyribonuclease activity GO:0035312 5'-3' exodeoxyribonuclease activity |
InterPro families    | IPR006085 XPG N-terminal IPR006084 DNA repair protein (XPGC)/yeast Rad |
Orthology group | ND |
Nucleotide sequence:
ATGGGTATAAAGGGGTTATGGACGGTGTTAGCTCCATACTCTGAGAAGATATCATTACAC
GAAATTAGTGGTCAAACTGTTGCCATAGACTTAGCTGGATGGGTTTGTGATAGCCAAAAT
GTTACTGAGTATTATATTCAGCCTAAGCTCTATCTAAGAAATCTATTCTTCCGAACTCTT
TACTTAGTGCTAAGTGATGTAAATCCTATATTTGTGCTTGAGGGTGATGCTCCAGAACTT
AAGAGAGATGTTATGGCTGCTAGAAATGCATTGCAGTTTAAAGGTGCAGCCCCTAAAGCT
ACCACAGAGAAAACAAAACAAACTAACATAACAAGAACAAGGTTCAAAGGGGTATTAAAA
GAGGTATGA
Protein sequence:
MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTEYYIQPKLYLRNLFFRTL
YLVLSDVNPIFVLEGDAPELKRDVMAARNALQFKGAAPKATTEKTKQTNITRTRFKGVLK
EV