New model in OGS2.0 | DPOGS201252  |
---|---|
Genomic Position | scaffold198:+ 9804-13871 |
See gene structure | |
CDS Length | 861 |
Paired RNAseq reads   | 207 |
Single RNAseq reads   | 2861 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012472 (6e-72) |
Best Drosophila hit   | mapmodulin, isoform A (3e-52) |
Best Human hit | acidic leucine-rich nuclear phosphoprotein 32 family member A (1e-31) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC030635 [Tribolium castaneum] (7e-58) |
Best NR hit (blastx)   | PREDICTED: similar to mapmodulin-like protein [Tribolium castaneum] (4e-55) |
GeneOntology terms    | GO:0005634 nucleus GO:0005737 cytoplasm GO:0005783 endoplasmic reticulum GO:0006913 nucleocytoplasmic transport GO:0048471 perinuclear region of cytoplasm |
InterPro families   | IPR001611 Leucine-rich repeat |
Orthology group | MCL11962 |
Nucleotide sequence:
ATGGAAAAAAGACTTGTTTTGGAATTAAGGGGAAGGAGTCCCTCTCAGATCCAAGAGCTC
AATTTGGATAATTGTAAAAGCACGGCCATTATAGGTCTCACAGATGAGTATACAAACCTT
GAGAACCTGAGTCTCATCAACGCTGGTCTCACAACACTCAAAGGTTTCCCCACTCTGCCC
AAGTTAAGGAAGCTCGAGCTCTCCGACAACAGAATATCACAGGGACTCAACTTCCTGAGC
GGATGCAAGAAACTCACCCATCTAAACCTATCAGGCAACAAAATCAAAGATTTAGAAACA
TTAAAGCCATTACAGGAGTTTGAGAACCTAAGGAATCTGGATCTCTTCTATAACGATGTC
ACCAACATTGAGGACTACAGAAGTAAAGTGTTCGCTATGCATCCGTCACTTAAATATTTA
GACGGTTTCGACAAAGAAGACCGTGAAGGTGACGACAGCGAGGCTGATGAAGATGACGCT
GAAGAAATGAACGGAAATAATGATAGTGACGAAGAAGATTTGGACTTAGATTTGGCTTCT
CTAGCGATTGATGATTCTATATCAGAAGGTTCATCGCCAAGTCTGCTAGTATCTTTATAC
ACAGTGTACGGTCTACTATTCCACTTGGGTTATATAATGAAAAAGTCTGGTGATGATGAC
GATGATGTGTCACTGCGTGCCGTGTACAGGGACAATCTTGTTGAAGAGAGTTCAGGCAGC
TCACTGTATGAGGGAGAGGAGGAGGAGGAAGATGACGACGACGATGATGATGACGACACA
CATAAGGAAGTCGATCAAAACACGCACGAGGAAGAGAGCACTCGAGGTAAGAAGAGAAAA
CACGAAGACGACGAGAACTGA
Protein sequence:
MEKRLVLELRGRSPSQIQELNLDNCKSTAIIGLTDEYTNLENLSLINAGLTTLKGFPTLP
KLRKLELSDNRISQGLNFLSGCKKLTHLNLSGNKIKDLETLKPLQEFENLRNLDLFYNDV
TNIEDYRSKVFAMHPSLKYLDGFDKEDREGDDSEADEDDAEEMNGNNDSDEEDLDLDLAS
LAIDDSISEGSSPSLLVSLYTVYGLLFHLGYIMKKSGDDDDDVSLRAVYRDNLVEESSGS
SLYEGEEEEEDDDDDDDDDTHKEVDQNTHEEESTRGKKRKHEDDEN