New model in OGS2.0 | DPOGS212645  |
---|---|
Genomic Position | scaffold3254:- 10107-10869 |
See gene structure | |
CDS Length | 420 |
Paired RNAseq reads   | 0 |
Single RNAseq reads   | 27 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013947 (5e-20) |
Best Drosophila hit   | orthopedia, isoform E (1e-20) |
Best Human hit | homeobox protein orthopedia (3e-17) |
Best NR hit (blastp)   | Short stature homeobox protein, putative [Pediculus humanus corporis] (4e-25) |
Best NR hit (blastx)   | orthopedia [Tribolium castaneum] (2e-19) |
GeneOntology terms    | GO:0003677 DNA binding GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0045449 regulation of transcription GO:0007417 central nervous system development GO:0007379 segment specification GO:0003704 specific RNA polymerase II transcription factor activity GO:0006355 regulation of transcription, DNA-dependent GO:0043565 sequence-specific DNA binding |
InterPro families    | IPR001356 Homeobox IPR012287 Homeodomain-related IPR009057 Homeodomain-like |
Orthology group | ND |
Nucleotide sequence:
ATGGCCACGGTACCCGTCAGCATGTCCTCATCAACGTCAGACAGCGACAAGCCAGCGAAA
CAGAAGAGACACAGAACGAGGTTTACACCGGCGCAGCTAAATGAGTTGGAGCGATGCTTC
ACTAAAACTCATTACCCAGATATATTCATGAGGGAGGAGATAGCCATGCGCATCGGACTG
ACGGAGAGTAGAGTACAGAACGGCACCTTGCGCGCCTCCCTCTTCGCACGTCGCGTACAA
AAGTTGCACTACATTGATACATTTCACGAGGCCTTCTACCTGGAGCGACCTTCGGTCCAC
GTACAAACAGATTTTATGTGGACTCTACGTGTCGAAACACTCTGCGAGTGGAAGATCGTC
GGTGTGGATCGCTTCACTCCGGACGTAACTTTTATGGAGTGTAAAAAGCTGCGGTTGTAA
Protein sequence:
MATVPVSMSSSTSDSDKPAKQKRHRTRFTPAQLNELERCFTKTHYPDIFMREEIAMRIGL
TESRVQNGTLRASLFARRVQKLHYIDTFHEAFYLERPSVHVQTDFMWTLRVETLCEWKIV
GVDRFTPDVTFMECKKLRL