| Genomic Position | scaffold1191:- 16601-19698 |
|---|---|
| See gene structure | |
| CDS Length | 2892 |
| Paired RNAseq reads | 1344 |
| Single RNAseq reads | 3504 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011711 (5e-53) |
| Best Drosophila hit | CG16940, isoform A (3e-102) |
| Best Human hit | DIS3-like exonuclease 2 (1e-130) |
| Best NR hit (blastp) | PREDICTED: similar to exosome complex exonuclease RRP44 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to exosome complex exonuclease RRP44 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003723 RNA binding GO:0004540 ribonuclease activity |
| InterPro families | IPR001900 Ribonuclease II/R IPR022966 Ribonuclease II/R, conserved site |
| Orthology group | MCL12021 |
Nucleotide sequence:
ATGTCTAAATCAGTGACCAATCCAAAGATTCAAAATAAAAATGAATCCTCCACGTCACAA
TCGACGACGCTTCAAGAATCGCATTGCAACAAAGATCCTCAGGATGAAGCTGCAGCTTCC
ACTTCTCGCTGCAATATGGACAAAGCCATAGTAGATGGTATTTCACAACAATGTGAGAAA
ATTTGTATTAACGATGAAAGAGTTCAAAATGTTTGTCAAAATTCTAGCGCGAATTTTGTT
AAAAAGAAAAACGCAAAGAAAAAAGAAAAGTTGAAAGACTTGCATATACAAATGCCTTCA
GTTAATGCATGTTCGCCTCCAACCGTTCAAACTGCACCTCCAGCCTACTCACACGATGGC
GGCAATTCAGTTCACGAGTATTTTAATAAACATGTCACACAGCTATATGCGAATACAAGT
GCACGATATCTAGAGAATCTCATCCACCATCCACAATATCATTTAATGTATAGTATGCGT
TTGAGAGAAATGTTTCAATTTCAAAACAGCCAATTTTTTGGAAGTGTCCCAAATACACCT
TCACGACCAAATACTCTTGGGCACTACTTACACAATGCAATGCAACACCCTCTTTTGTCG
AAGGAATATTTAAATCATGTCCATACAAACCAGAATCAAAATGCATTTCACAGAGCACCT
GAAAAGGCAAGTACAAATATAAATATTAAAAAAGAAATAAATAATTCACCAAAACAGAAT
AAAAAACAGAAGAAAGATCAAAATGGGGCCGACAAAGTATTTGATGCCTATTTGTGTAAA
GAGGAAGTGATGGAAGGATTAAAAAATAACAGTTTAATCGAAGGTGTATTGAAAATAAAC
CCAAAACAATTCCAAAATTCATATGTGTCAAGTATGGATCGGAATGAACAGGATATTCTT
ATAGAAGGTGTGAAAAATAGGAACCGGGCATTAGAAGGTGATATCGTTGTTGTACAATTT
ATTGAGAGTGATGATGAGGATAGTGAAAAGCATAATAATTCTGATAGCAGTAGTAAACAA
AGAAAGGGAAGAGTTGTATTTATCAAAGAGAAAGTACACACAAGAAAATGTATTGGTTAT
TTAAAACTGATGCCCGATAAGAATAGACAAAGAGCGCTCTTTGTCCCTAGAGACTATAGA
ATACCAAGACTTAATATACCGTTTACAAGTTGGCCAGATAATTTTTACCACGAATCAAAG
AGTTATGAAAACACACTCTTCCTTGCTAGTATTTTTGATTGGTTTGATGTAAGGTTCGCA
CTTGGTAAACTAATTTGTAATATTGGTCAGTCAGGAGATATGCAGACAGAAACGAAAGCA
ATTTTAGCACAAATGGATTTAGATATCACACCGTTTGGTGAAGATGTCCGGCATTTATTT
CCACGCTTGGATTTCATTATACCAGAAGAAGAAATTAGATCTAGAGAAGATTGCAGACAT
TTATGCATTTTTAGTATAGATCCGATAAATACCCGTGACATAGATGATGCTGTGTCATGC
AGGAAACTTGCCAATGGAAACTACGAGATAGGTGTTCATATATCCGATGTTTCTTACTTT
CTGCATGAAGGCACTTTATTGGATGAAAAAGTCTCTGAAAAGGCAACAACTATTTATATG
GTTGAAAGGGCTTATCACATGTTACCGGATGAGCTATGTATGTTATGTTCCCTGTTTCCA
GGCATTGATAAACTCGCTTTTTCTGTGTTTTGGGAAATAACTGATGATGGTATTGTTTTG
AATCATAGATTTTCCAGGACTGTTATCCATTCGTGTTGTCAATTAGCATATGACCATGCA
CAAGCTGTGCTGGATGAAAAAGAGGATGCAGAGAAGTCGTTTCCTGAAATTTATAATGGA
TTTACTTACAAAGACATTTCTGAAACTATAAAGGTACTTGGAAAAATATCAGCAATATTT
AGAAGGAGACGCTTTGATAATGGTGCTTTACGTATCGATCAGCCTAAGATTGCATTTCAT
TTAAGTGCAGCAAACGGGCTGCCTGATTCTTATTGGATATACGAAAGCAGGGAAAGCCAT
CAGCTGATAGAAGAATTTATGTTACTTGCTAATATGACAGTTGCAAAGAGAATTCACGAT
GACCACCCAAAATTAGCATTTTTAAGGTGTCATCCAGCACCTAGCAATTATTTGTTAAAA
CAACTTGAAAAATCCCTAAAACCGTTGGGTATCGATATTGATATTTCATCAGCGGGCAAT
CTTCATAGATCCCTGACAGATTATTTAGATCAAAACAGCTTAGATAAAGGGAAAGCAATG
GTTCTTAGCATGTTGTGCACGAAACCGATGACGAGAGCAAAGTATTTTTGTGCAGCCTCA
TGCGTGGATGACGATTTCCATCACTATGCTCTTAATGTTCCATTGTATACTCACTTCACT
AGTCCAATACGGCGCTACGCAGATATCATGGTTCATAGGCTGTTATCAGCAAGCCTTAAC
TACAGCAAAGTTCCTGCTTGGGAAGTTGATAAGGTCAGAATGGTGGCTGCCAATTGTAAC
AAACAGAAGTACAATGCTAAGAGAGCCGGTGAAATGTCCACTGAGCTTTACACTTTGAAG
TACATAGAAATTAACTCGCCAGTTACAGCAGAAGCCGTTGTTGTTGATGTCAAGGAAAAA
TATATTGATGTTATAATAACGGCGATGGGTTTAAATCGACGCATTTTCTTCAATAACGAT
TTCCCAGGTGAATTCCTTTGTGTTAAAAACGATGCAGGCGTAAGACTTTCCAAAATGGAG
TTGACGTGGAACGAAACAGACACTCTGCCTTCCGTTAAACAAGTTATTGAAGTATTTTCC
TTACTACAAGTAGAATTGTACAAAGGGGATGACATGTTGAAAGTAGAGACGAAGCTTGTA
AGGCCGAAATGA
Protein sequence:
MSKSVTNPKIQNKNESSTSQSTTLQESHCNKDPQDEAAASTSRCNMDKAIVDGISQQCEK
ICINDERVQNVCQNSSANFVKKKNAKKKEKLKDLHIQMPSVNACSPPTVQTAPPAYSHDG
GNSVHEYFNKHVTQLYANTSARYLENLIHHPQYHLMYSMRLREMFQFQNSQFFGSVPNTP
SRPNTLGHYLHNAMQHPLLSKEYLNHVHTNQNQNAFHRAPEKASTNINIKKEINNSPKQN
KKQKKDQNGADKVFDAYLCKEEVMEGLKNNSLIEGVLKINPKQFQNSYVSSMDRNEQDIL
IEGVKNRNRALEGDIVVVQFIESDDEDSEKHNNSDSSSKQRKGRVVFIKEKVHTRKCIGY
LKLMPDKNRQRALFVPRDYRIPRLNIPFTSWPDNFYHESKSYENTLFLASIFDWFDVRFA
LGKLICNIGQSGDMQTETKAILAQMDLDITPFGEDVRHLFPRLDFIIPEEEIRSREDCRH
LCIFSIDPINTRDIDDAVSCRKLANGNYEIGVHISDVSYFLHEGTLLDEKVSEKATTIYM
VERAYHMLPDELCMLCSLFPGIDKLAFSVFWEITDDGIVLNHRFSRTVIHSCCQLAYDHA
QAVLDEKEDAEKSFPEIYNGFTYKDISETIKVLGKISAIFRRRRFDNGALRIDQPKIAFH
LSAANGLPDSYWIYESRESHQLIEEFMLLANMTVAKRIHDDHPKLAFLRCHPAPSNYLLK
QLEKSLKPLGIDIDISSAGNLHRSLTDYLDQNSLDKGKAMVLSMLCTKPMTRAKYFCAAS
CVDDDFHHYALNVPLYTHFTSPIRRYADIMVHRLLSASLNYSKVPAWEVDKVRMVAANCN
KQKYNAKRAGEMSTELYTLKYIEINSPVTAEAVVVDVKEKYIDVIITAMGLNRRIFFNND
FPGEFLCVKNDAGVRLSKMELTWNETDTLPSVKQVIEVFSLLQVELYKGDDMLKVETKLV
RPK