New model in OGS2.0 | DPOGS206111  |
---|---|
Genomic Position | scaffold89:+ 10826-12061 |
See gene structure | |
CDS Length | 1236 |
Paired RNAseq reads   | 390 |
Single RNAseq reads   | 1179 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006832 (6e-151) |
Best Drosophila hit   | TBPH, isoform F (2e-96) |
Best Human hit | TAR DNA-binding protein 43 (4e-85) |
Best NR hit (blastp)   | PREDICTED: similar to TBPH CG10327-PA, isoform A [Apis mellifera] (2e-133) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC006055 [Tribolium castaneum] (3e-110) |
GeneOntology terms    | GO:0003729 mRNA binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0008344 adult locomotory behavior GO:0007528 neuromuscular junction development |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL11836 |
Nucleotide sequence:
ATGTCCTTCGAGTACTTGCCCGTGGCCGAAGATGAAAATGAAGAACCCATAGAACTTCCA
ATTGAAGAAGATGGGACTTTGATGTTAACAACTGTATCCGCGCAGTTTCCTGGCTGTTGT
GGACTCAAGTATCGTCATCCTGAAACGAAAACGTTTAGAGGTATAAGATTACGAGATGGT
AGGCTTTACCCACCACCAGAAGGTTGGGGAAATCAACTGTACATATGCAGTTTTCCGAAA
GAAAATAAACGAAAATCTGGTGACAATTCTGAAACATCTTCGGTGAAAAGTAAACGGAAT
GATAATTTGTGCTCAGATTTAATAGTGTTGGGGTTACCATGGAAAGCAACAGAGCAAACC
GTGCGGGAGTATTTCGAAAAGTTTGGCGAAGTGTTAATGGCTCAATTAAAACGTGATCCT
AAAACCGGTATGTCAAAAGGCTTCGCTTTTATTAGATTTTCATCTTACACATCTCAGATG
AGAGTCTTAGCTCAAAGACATATGATTGATGGACGTTGGTGTGATGTACGGATACCTAAC
TCAAAGGAAGGTTCTGTCACATCTATGCCTTGTAAAGTTTTTGTTGGCCGCTGTACAGAA
GATTTAACAGCCAATGATTTAAGAGAATATTTTTCACAATTTGGTGAAGTAACAGATGTT
TTTATTCCAAAGCCTTTTAGGGCATTCAGCTTTATAACATTTTTGGATCCTGAAGTTGCA
CAAAGCTTATGTGGTCAAGACCACATTATAAAAGGAGTATCTGTAAATGTGTCTAATGCA
TCACCTAAACAAAATAAAAGTGGTTCTAATCAACGAAACTTACCAAGTAGAAACTATGAA
GAAGGACATCCACACAGTGCCTCAAACAATAATTCATGGAGTAGCCGTAATATGGATATG
GTGAATATGCAAGCCTTAGGATTGTCTGGCCAACACGGTCAAACCGCCGTGGCCGGTGGT
GGAGGGCAAGGCCAAGGTGGAAGTATGCCACTCGGCATGGGTGGTTTGCCAGTAAATCAA
GCTCTAGTAGCTGCTGCACTAAATCAGGCAGCAGGCTGGGGTTTAATTAATAATATACCA
TCGGGGGGATCAGATCAAGGTGCCTTTGCTGGACCGGCTTCTTCTGCTCCACCAGCACCA
CCTAACTTCCTGTCATGGATGCAACAGGGCAATTCTGGACAAGGACCTTCTAGTCAGTGG
GGACAGAGACACCAATCCCAAGGCCACTCCGTTTGA
Protein sequence:
MSFEYLPVAEDENEEPIELPIEEDGTLMLTTVSAQFPGCCGLKYRHPETKTFRGIRLRDG
RLYPPPEGWGNQLYICSFPKENKRKSGDNSETSSVKSKRNDNLCSDLIVLGLPWKATEQT
VREYFEKFGEVLMAQLKRDPKTGMSKGFAFIRFSSYTSQMRVLAQRHMIDGRWCDVRIPN
SKEGSVTSMPCKVFVGRCTEDLTANDLREYFSQFGEVTDVFIPKPFRAFSFITFLDPEVA
QSLCGQDHIIKGVSVNVSNASPKQNKSGSNQRNLPSRNYEEGHPHSASNNNSWSSRNMDM
VNMQALGLSGQHGQTAVAGGGGQGQGGSMPLGMGGLPVNQALVAAALNQAAGWGLINNIP
SGGSDQGAFAGPASSAPPAPPNFLSWMQQGNSGQGPSSQWGQRHQSQGHSV