| New model in OGS2.0 | DPOGS205581 |
|---|---|
| Genomic Position | scaffold1229:+ 5591-20447 |
| See gene structure | |
| CDS Length | 2166 |
| Paired RNAseq reads | 5177 |
| Single RNAseq reads | 15452 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009674 (9e-50) |
| Best Drosophila hit | lin-19-like, isoform D (4e-169) |
| Best Human hit | cullin-1 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to SCF complex protein cul-1 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to SCF complex protein cul-1 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0019005 SCF ubiquitin ligase complex GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process |
| InterPro families | IPR016157 Cullin, conserved site IPR001373 Cullin, N-terminal IPR019559 Cullin protein, neddylation domain IPR016159 Cullin repeat-like-containing domain IPR016158 Cullin homology IPR011991 Winged helix-turn-helix transcription repressor DNA-binding |
| Orthology group | MCL11112 |
Nucleotide sequence:
ATGAGCTCTATCATGATGAAGCCTCTACTGAGACAGATCGATTTGGACAATATATGGGGG
GATCTGAGAGAAGGAATCGAACAGGTCTACAAGAGGGAGTATATGCACAGACAGAGATAC
ATGGACCTATATACTCACGTGTACAACTACTGTACGTCGGTACATCAGCAGAGCTCTAGC
GGTTCCAGCAAAAGCCTCACCACCAGCAACAGTTTCGGCAGCTACAGCAGTCGGAACAGG
AATAAGACCGGTCAAGTCGGCAGCGGGGCTCAATTGGTTGGTCTCGAGCTATACAAACGA
CTGAGAGAATTCTTGAGGACATATCTATATATGTGTGTGTGTAACGGGTCCGACCTGATG
GGTGAGGATGTACTGGCGTACTACACCAAGCAGTGGGAATTGTACCAGTTCTCATCTCGT
GTCCTCAACGGTGTCTGTTCATACCTCAATCGGCATTGGGTGAAAAGGGAGTGCGAGGAG
GGTAGAAAGAATATATACGAGATATATCAGCTGGCTTTGGTCACGTGGCGCGACAATTTG
TTCAAATGTCTGAACAAGCAAGTTACAAATGCTGTGCTCAAATTGATTGAGCGAGAGCGG
AACGGAGAGACGATTAACACGAGACTAGTTACAGGAGTTATCAACTGCTACGTAGCGCTG
GGTCTGAACGAGGACGATGTGTCTTCGAGGGGCCAAAATCTGGTGGTCTACAAGGACACC
TTCGAAGCTGTCTTCCTTGAAGACACAGAGAGGTTCTACATAAGGGAGAGCTCGGACTTC
CTAAAGAACAACCCGGTCACAGAATACATGATTAAGGCGGAACAGCGTCTCCACGAGGAA
CAGAAACGTGTCCAGGTGTACTTACACGAGACAACCATGGAGAGACTCGCCAAGACCTGC
GACAGAGTCCTCATAGAGAAACACCTGGAGATATTCCACGCTGAGTTCCAGAAACTTCTT
GACGGCAACAAGAACACAGACCTGGGTCGCATGTACAGTTTGGTAGCCAGGATACCCAGC
GGTCTATGCGAACTGCGGAAACTTCTGGAACAGCACATACACACACAGGGCCTGCACGCG
ATCGACAAGTGCGGGGACTGTGTACACACGGATCCTAAAGTGTATGTTTCGACAATACTT
GAAGTACACAAGAAGTACAACGCTCTAGTACTAATGGCCTTCAACAACGACTCCGGCTTT
GTGGCGGCACTTGACAAAGCCTGTGGCAGATTCATAAACAGTAATTCAGTAACAAAAGCA
GCTAACTCTTCATCCAAAAGTCCCGAACTGCTCGCTAAATATTGTGACCTTCTGTTGAAG
AAGTCTAGCAAGAACCCCGAGGAAGCTGAGCTGGAGGATACTCTGAATCAAGTTATGGTT
GTCTTCAAGTACATAGAGGATAAAGATGTTTTCCAGAAGTTCTACAGCAAGATGCTGGCT
AAACGGCTGGTCCAGCACATGTCGGCCAGTGACGACGCCGAGGCGTCGATGATATCAAAA
CTGAAACAGGCCTGCGGGTTCGAATACACCAGCAAGCTGCAGAGGATGTTCCAGGACATT
GGCGTGTCGAAGGATTTAAACGAGAACTTCCGGAAGCACATGTCCAACAGTTCAGAACAA
CCGCTGCACATAGACTTCAGTATCCAGGTGTTGTCTTCTGGTTCGTGGCCCTTCCAGCAG
TCGTCCAGTTTCCAGTTGCCCACGGAGGCGCATACCTCCGTGGGCAACTGGAAACTGGAC
GACTGCTGGAAGGGCCACGAACCAGAAGACAACACCTGGATACTGAAGTCTATGTGCAGC
GGTTGTTCTGAACTGTTGGACATGTGCTTCCGGAAGTTCTCGTTTAAATCCTTCGACACG
CCAATTAAAAAACTGCGAGTCAATATAAATATACCGCTGAAGACGGAGTTGAAAGTTGAA
CAAGAGGCGACCCACAAGCACATCGAGGAAGACAGGAAGATGCTCATACAGGCTGCCATA
GTCCGCATCATGAAGACTCGCAAAACTCTCAAACATCAACACCTGGTGGTGGAAGTGCTG
AATCAGCTGTCATCCCGGTTCAAACCCCGTGTGCCCGTCATTAAGAAATGCATCGACATA
CTGATTGAGAAGGAGTACCTGGAACGCACGGAGGGAGAGAAAGACACGTACAGTTATCTA
GCTTGA
Protein sequence:
MSSIMMKPLLRQIDLDNIWGDLREGIEQVYKREYMHRQRYMDLYTHVYNYCTSVHQQSSS
GSSKSLTTSNSFGSYSSRNRNKTGQVGSGAQLVGLELYKRLREFLRTYLYMCVCNGSDLM
GEDVLAYYTKQWELYQFSSRVLNGVCSYLNRHWVKRECEEGRKNIYEIYQLALVTWRDNL
FKCLNKQVTNAVLKLIERERNGETINTRLVTGVINCYVALGLNEDDVSSRGQNLVVYKDT
FEAVFLEDTERFYIRESSDFLKNNPVTEYMIKAEQRLHEEQKRVQVYLHETTMERLAKTC
DRVLIEKHLEIFHAEFQKLLDGNKNTDLGRMYSLVARIPSGLCELRKLLEQHIHTQGLHA
IDKCGDCVHTDPKVYVSTILEVHKKYNALVLMAFNNDSGFVAALDKACGRFINSNSVTKA
ANSSSKSPELLAKYCDLLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYSKMLA
KRLVQHMSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNENFRKHMSNSSEQ
PLHIDFSIQVLSSGSWPFQQSSSFQLPTEAHTSVGNWKLDDCWKGHEPEDNTWILKSMCS
GCSELLDMCFRKFSFKSFDTPIKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAI
VRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYL
A