| New model in OGS2.0 | DPOGS204315 |
|---|---|
| Genomic Position | scaffold38920:- 1251-2078 |
| See gene structure | |
| CDS Length | 456 |
| Paired RNAseq reads | 362 |
| Single RNAseq reads | 1086 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007585 (1e-66) |
| Best Drosophila hit | cap binding protein 20 (1e-56) |
| Best Human hit | nuclear cap-binding protein subunit 2 isoform 1 (2e-50) |
| Best NR hit (blastp) | nuclear cap-binding protein subunit 2 [Bombyx mori] (2e-71) |
| Best NR hit (blastx) | nuclear cap-binding protein subunit 2 [Bombyx mori] (3e-68) |
| GeneOntology terms | GO:0000339 RNA cap binding GO:0005846 nuclear cap binding complex GO:0003729 mRNA binding GO:0005681 spliceosomal complex GO:0005634 nucleus GO:0000398 nuclear mRNA splicing, via spliceosome GO:0000166 nucleotide binding GO:0005875 microtubule associated complex GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome GO:0045071 negative regulation of viral genome replication GO:0030422 production of siRNA involved in RNA interference GO:0035195 gene silencing by miRNA |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL13289 |
Nucleotide sequence:
ATGAATTCCTCTATAGAAATTAGTTCATACCGAGATCAGCATTTTAAGGGATCAAGAACA
GAACAAGAGAAATTATTAAGGGCATCATCTACACTGTACATAGGAAACTTATCGTTCTAC
ACAACTGAGGAGCAGATATATGAATTATTCTCACGTTGCGGTGATATACGAAGAGTCATA
ATGGGATTGGATAAATATAAAAAAACTCCATGTGGATTTTGTTTTCTAGAATATTATACG
AGGCCAGATGCAGAGGACTGCATGAGATATATAAATGGCACAAGACTGGATGATAGGATT
ATAAGATGTGATTGGGATGCTGGGTTTATTGAAGGCAGACAATATGGAAGAGGGAAGACT
GGTGGACAGGTTCGTGATGAATACCGTACCGACTATGATGGCGGTCGTGGCGGTTATGGG
AAAATAATTGCGCAGAAAATTGTACCAAATACATAA
Protein sequence:
MNSSIEISSYRDQHFKGSRTEQEKLLRASSTLYIGNLSFYTTEEQIYELFSRCGDIRRVI
MGLDKYKKTPCGFCFLEYYTRPDAEDCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKT
GGQVRDEYRTDYDGGRGGYGKIIAQKIVPNT