| New model in OGS2.0 | DPOGS201879 |
|---|---|
| Genomic Position | scaffold2813:+ 3820-5263 |
| See gene structure | |
| CDS Length | 1026 |
| Paired RNAseq reads | 1791 |
| Single RNAseq reads | 4477 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006056 (3e-50) |
| Best Drosophila hit | CG4038 (7e-36) |
| Best Human hit | H/ACA ribonucleoprotein complex subunit 1 (5e-33) |
| Best NR hit (blastp) | PREDICTED: similar to CG4038-PA [Apis mellifera] (6e-43) |
| Best NR hit (blastx) | PREDICTED: similar to CG4038 CG4038-PA [Tribolium castaneum] (4e-41) |
| GeneOntology terms | GO:0030532 small nuclear ribonucleoprotein complex GO:0031429 box H/ACA snoRNP complex GO:0009982 pseudouridine synthase activity GO:0005732 small nucleolar ribonucleoprotein complex GO:0006364 rRNA processing GO:0031118 rRNA pseudouridine synthesis GO:0030515 snoRNA binding GO:0030559 rRNA pseudouridylation guide activity |
| InterPro families | IPR007504 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 IPR021154 H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel |
| Orthology group | MCL16090 |
Nucleotide sequence:
ATGTCCTTCCGCGGAAGAGGAGGCGGCGGCGGTCGTGGTGGATTTGGTGGCCGAGGCGGA
GGAGGAGGCGGTGGCCGCGGATTTGGCGGAGGACGAGGACGCGGCGGCGGCGGCGGCGGC
GGCTTCAGGTCATACCAAGACCAAGGCCCTCCAGAATCAGTTATTCCGCTCGGTCACTAC
GGATGGACTGTTCAAGATGACCTCGTGTGTAAAGTAGACATAGAAGACGTACCATACTTT
AATGCACCCATCTTTCTTGAAAACAAGGAACAGATTGGTAAAATAGATGAGATATTCGGT
AACTTGCGTGATTACTATGTGTCCGTGAAGCTCGGAGAGAACATTAAGGCAAAAAGTTTT
AAGGAGGGACAACAATTTTTCATTGATCCAGCAAAATTATTGCCATTGAAGAGATTCCTA
CCTCAACCTCCTGGAGCTAAGAGAGGCGGTGGCCGAGGTGGTGGTGGTCGTGGAGGTAGA
GGTGGTGGTGGCAGAGGCGGAGGTGGTGGCTTCGGACGAGGCGGTGGCGGAGGTTTCGGC
AGGGGAGGAGGTGGAGGAAGGGGAGGAGGCTTTGGCAGAGGAGGAGGAGGTGGAGGAGGT
TTTGGAAGAAGCGGTGGTGGTGGTGGTCGTGGAGGCAGAGACATCACTACTGAGGATATT
TGGGTGTCGTCCTCCAAATCAGATATATTTCTTTATTCACGAATTTTAAAGGGCATTGTG
ATAATAGAGCCCTTCCCCAACATCCCCAAAGACTATGCCATCAAGGACAATAAATATTAT
GAGCTCACTAACGAACTCACTAGGAATAGGTTCATTGTGGATTTGTACGGGGTAGAAGTG
GGAGCAAGAGGTATAATGGCAAAATCTTTCTACAACCTACTAAAAGACTTGGGCCTGTCC
AGAATTAATATCAATTCATCCATGGAACATACTTCAAAGGGAGACCTAGTAGGTTCTTTT
CAAATTTGTTTAGGTAGAGGGAGGAGCTTAGATGGTGGAGGTGAGGGTGTAACACACGTT
AGATAG
Protein sequence:
MSFRGRGGGGGRGGFGGRGGGGGGGRGFGGGRGRGGGGGGGFRSYQDQGPPESVIPLGHY
GWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYYVSVKLGENIKAKSF
KEGQQFFIDPAKLLPLKRFLPQPPGAKRGGGRGGGGRGGRGGGGRGGGGGFGRGGGGGFG
RGGGGGRGGGFGRGGGGGGGFGRSGGGGGRGGRDITTEDIWVSSSKSDIFLYSRILKGIV
IIEPFPNIPKDYAIKDNKYYELTNELTRNRFIVDLYGVEVGARGIMAKSFYNLLKDLGLS
RININSSMEHTSKGDLVGSFQICLGRGRSLDGGGEGVTHVR