| New model in OGS2.0 | DPOGS212407 |
|---|---|
| Genomic Position | scaffold871:- 18542-20376 |
| See gene structure | |
| CDS Length | 1011 |
| Paired RNAseq reads | 119 |
| Single RNAseq reads | 361 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002806 (4e-14) |
| Best Drosophila hit | CG34140 (2e-45) |
| Best Human hit | tRNA pseudouridine synthase-like 1 (8e-24) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC012867 [Tribolium castaneum] (1e-54) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC012867 [Tribolium castaneum] (1e-53) |
| GeneOntology terms | GO:0003674 molecular_function GO:0008150 biological_process GO:0005575 cellular_component |
| InterPro families | IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain IPR020094 Pseudouridine synthase I, TruA, N-terminal IPR020095 Pseudouridine synthase I, TruA, C-terminal IPR001406 Pseudouridine synthase I, TruA IPR020103 Pseudouridine synthase, catalytic domain |
| Orthology group | MCL15342 |
Nucleotide sequence:
ATGAGAGCTAGATTTGCGACATTCTTTTCATATATTGGAACACGGTTTAGATCGTCTGAA
AAAATATGGCTTAAGGAGGGTCGTTACTATCCGGACCCTGAGAGCATTCAAGGTTTAATG
GAACTGGCTCTACTTAAAATTAAACCATTAAATTACCCTAACGTATTTCTATCAAGCCGC
ACAGATGGTGGAGTACATGCTCTGAACACATGTGCACATTTTGATTTGGAGAGACATAAG
GATTTAGTTTACGAGCCAGCATACCTAGAACATGAAATCAATAAATACTTCTTTGAGCAC
AACATAAGCATACAAGTTAACAAATGTCTTCAAGTCAACGATGATTTCAACGCTAGACAT
GACGCTTTATCACGGACATACCTCTACAGGTTAGCAGTTATAAAACCTGAAATAAAATTA
GACGAGAAAATAAACATTGCAACATTGATACCAATCGAAGAATGGAGGAGATGTCACTTC
ATTAAACCAAAAATTTTTGATATAGAGCTGTTTAAAGAAGGTGCTAAGTACTTTGTGGGA
TATCACGACTTCACAACATTCAAAAGATTCGACAAATTGAAGGCCCACAAACACAACAGG
AGAGAAATTAAGAGTATAAACATAAAACAGGGCTCTCCGTGTGTCACAAGTTATTCAACT
AAAAGGGATAGTTGTTTTAATTACTGGGATATTGAGGTACATGGAAGATCCTTTGTACAT
AATCAGATACGTCGGATGATAGGTACATTAATATCTGTGGCTTCCGGTAAGTTACAACCG
AAAGACATTCAGGTGATGCTACAGGTACCTTCCAAACACTCCTGGCATTCGTTCATACAG
AACTGTCCACCCGACGGCCTCTACCTGGCTGATGTCGAATACAAACAAGAAGATCTTATA
TATGACCCAAATAGGCTGAATATTTTGGACAGTGGACATGAGTTTCTTGAGCGAATTGAA
AAAGAAAAAGGAGGAATTGAGGAACGCCGTGACTGTCGTGACTCGTGCTGA
Protein sequence:
MRARFATFFSYIGTRFRSSEKIWLKEGRYYPDPESIQGLMELALLKIKPLNYPNVFLSSR
TDGGVHALNTCAHFDLERHKDLVYEPAYLEHEINKYFFEHNISIQVNKCLQVNDDFNARH
DALSRTYLYRLAVIKPEIKLDEKINIATLIPIEEWRRCHFIKPKIFDIELFKEGAKYFVG
YHDFTTFKRFDKLKAHKHNRREIKSINIKQGSPCVTSYSTKRDSCFNYWDIEVHGRSFVH
NQIRRMIGTLISVASGKLQPKDIQVMLQVPSKHSWHSFIQNCPPDGLYLADVEYKQEDLI
YDPNRLNILDSGHEFLERIEKEKGGIEERRDCRDSC