| New model in OGS2.0 | DPOGS212437 |
|---|---|
| Genomic Position | scaffold871:+ 242-4554 |
| See gene structure | |
| CDS Length | 2451 |
| Paired RNAseq reads | 3468 |
| Single RNAseq reads | 7589 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002895 (0.0) |
| Best Drosophila hit | peanuts (0.0) |
| Best Human hit | ATP-dependent RNA helicase DHX8 (0.0) |
| Best NR hit (blastp) | ATP-dependent RNA helicase [Aedes aegypti] (0.0) |
| Best NR hit (blastx) | GK22168 [Drosophila willistoni] (0.0) |
| GeneOntology terms | GO:0007286 spermatid development GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0004004 ATP-dependent RNA helicase activity GO:0003723 RNA binding GO:0005524 ATP binding GO:0005634 nucleus GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR007502 Helicase-associated domain IPR011709 Domain of unknown function DUF1605 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site |
| Orthology group | MCL10048 |
Nucleotide sequence:
ATGATATCATCAGGTGTGATCGATAAAAGCGAGTTGCCAGATTTCGATGAAGAAACGGGT
CTTCTGCCCAAAGAGGAGGACGGAGAAGCGGACATCGAGATAGAACTGGTCGAGGAGGAA
CCGCCCTTCCTACAAGGTCACGGGCGAGCTCTACACGACCTGTCCCCTGTTAGAATAGTC
AAGAATCCTGATGGATCACTAGCGCAGGCCGCCATGATGCAGTCCGCTCTGGCGAAGGAG
AGAAGAGAACAGAAGATGATACAGAGAGAACAGGAGATGGAGAGTCTGCCGACCGGTCTC
AACAAAAACTGGATCGATCCTCTACCGGAAGCGGACGGGAGGGCGTTAGCGGCTAACATG
CGAGGCTCGGGCATAACACCGCAGGACTTGCCCGAGTGGAAGAAACACGTCATCGGGGGG
AAGAAATCTTCATTCGGCAAGAAAACTAACCTGTCCCTCCTGGAGCAGAGGCAGTCCCTG
CCTATTTACAAGTTGAGAGACGAATTGACCAAGGCCATATCCGACAACCAGATCCTGATA
GTGATAGGAGAGACGGGTTCCGGGAAGACGACTCAAATCACGCAGTACGTCTGCGAGTGT
GGCGTGTCCGGGCGGGGCCGGGTGGCGTGCACCCAGCCCAGGAGAGTGGCCGCCATGTCC
GTCGCCAAGAGGGTCGCTGAGGAGTTCGGCTGCAGGCTGGGTCAAGAGGTCGGCTACACC
ATACGATTTGAGGACTGCACCGGACCCGACACGGTCATCAAGTACATGACAGACGGTATG
TTGCTCCGCGAGTGTCTGATGGATCTGGACCTGAAGAGCTACTCCGTCATCATGCTGGAC
GAGGCCCACGAGCGCACCATACACACGGACGTGCTGTTCGGCCTCCTCAAACAAGCGGTC
CAGAAACGACCGGAACTCAAACTGATCGTGACATCCGCCACCCTGGACGCCGTGAAATTC
TCCCAGTACTTCTTCGAGGCCCCCATCTTCACCATACCCGGACGGACCTTCCCCGTCGAG
GTTCTGTACACAAAGGAACCGGAAACGGATTACCTGGACGCCTCCTTAATAACCGTCATG
CAAATACATCTGCGTGAACCGCCCGGGGATATTCTGCTGTTTTTGACCGGCCAGGAGGAA
ATCGACACCGCCTGCGAGATACTGTACGAGAGGATGAAGTCCCTCGGCCCGGATGTACCT
GAGCTGATCATTCTTCCGGTTTACTCCGCCCTTCCGTCTGAGATGCAGACCAGAATCTTC
GAACCCGCTCCGCCTGGCTCGAGGAAGGTGGTGATAGCTACCAACATAGCGGAGACCTCG
CTCACCATAGACGGCATTTACTACGTAGTGGACCCCGGGTTCGTCAAACAGAAGGTCTAC
AATTCAAAGACCGGTATGGACTCGTTGGTCGTCACCCCGATCTCACAGGCGGCGGCGAAA
CAGCGAGCCGGTCGTGCGGGTCGGACTGGCCCGGGGAAGTGTTACCGACTGTACACGGAG
CGCGCATACCGGGATGAAATGTTGCCCACCCCTGTCCCGGAAATACAAAGGACTAATCTC
GCCACTACAGTGCTGCAACTCAAGACGATGGGTATAAACGACTTGCTGCACTTCGACTTC
ATGGACGCCCCGCCCGTGGAGTCCCTCATCATGGCGCTGGAACAGCTACACTCCCTGTCT
GCCCTCGACGCCGAGGGGCTGCTCACCAGACTCGGGAGACGGATGGCGGAATTCCCCTTA
GAGCCGAACCTGTCCAAGATTCTGATTATGTCCGTAGCTCTGCAGTGCTCCGACGAAATA
CTGACAATAGTGTCGATGTTGAGCGTACAAAATGTCTTCTACCGACCCAAAGACAAACAG
GCCTTGGCCGATCAGAAGAAAGCTAAGTTCAACCAGGCGGAGGGTGATCATCTGACGTTG
TTGGCTGTCTATAACAGCTGGAAAAATAATAAATTCTCCAACGCCTGGTGTTATGAGAAC
TTTGTCCAGATACGTACGTTGAAACGGGCGCAGGACGTTAGAAAACAACTGCTGGGGATT
ATGGATAGGCATAAGTTGGACGTAGTGTCAGCAGGGAAGAACACGGTGAGGATACAGAAG
ACCATCTGTTCAGGGTTCTTCAGGAATGCAGCAAAGAAAGACCCGCAAGAAGGGTACAGA
ACACTAGTTGATAGTCAGGTTGTCTATATTCACCCCTCCAGCGCCCTATTTAATCGGCAG
CCAGAATGGGTAATTTACCATGAGTTAGTACAAACAACAAAAGAATATATGAGAGAAGTA
ACTACAATCGATCCCAAATGGCTCGTCGACTTCGCCCCGGCATTCTTCAAGTTCTCAGAC
CCGACGAAACTGTCCAAATTCAAGAAAAATCAACGATTGGAGCCTCTGTATAATAAATAT
GAGGAACCGAATGCTTGGCGTATATCACGCGTTAGGAGACGTAGAAATTAA
Protein sequence:
MISSGVIDKSELPDFDEETGLLPKEEDGEADIEIELVEEEPPFLQGHGRALHDLSPVRIV
KNPDGSLAQAAMMQSALAKERREQKMIQREQEMESLPTGLNKNWIDPLPEADGRALAANM
RGSGITPQDLPEWKKHVIGGKKSSFGKKTNLSLLEQRQSLPIYKLRDELTKAISDNQILI
VIGETGSGKTTQITQYVCECGVSGRGRVACTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT
IRFEDCTGPDTVIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAV
QKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVM
QIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIF
EPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAK
QRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDF
MDAPPVESLIMALEQLHSLSALDAEGLLTRLGRRMAEFPLEPNLSKILIMSVALQCSDEI
LTIVSMLSVQNVFYRPKDKQALADQKKAKFNQAEGDHLTLLAVYNSWKNNKFSNAWCYEN
FVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYR
TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTTIDPKWLVDFAPAFFKFSD
PTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN