New model in OGS2.0 | DPOGS212441  |
---|---|
Genomic Position | scaffold871:+ 76379-81646 |
See gene structure | |
CDS Length | 1848 |
Paired RNAseq reads   | 11 |
Single RNAseq reads   | 38 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002904 (8e-76) |
Best Drosophila hit   | BBS1 (2e-64) |
Best Human hit | Bardet-Biedl syndrome 1 protein (1e-68) |
Best NR hit (blastp)   | hypothetical protein AaeL_AAEL009211 [Aedes aegypti] (6e-107) |
Best NR hit (blastx)   | PREDICTED: similar to BBS1 [Tribolium castaneum] (7e-104) |
GeneOntology terms    | GO:0003674 molecular_function GO:0005575 cellular_component GO:0060026 convergent extension GO:0070121 Kupffer's vesicle development GO:0060027 convergent extension involved in gastrulation GO:0033339 pectoral fin development GO:0007368 determination of left/right symmetry GO:0032402 melanosome transport GO:0042384 cilium assembly |
InterPro families    | IPR015943 WD40/YVTN repeat-like-containing domain IPR011046 WD40 repeat-like-containing domain |
Orthology group | MCL11557 |
Nucleotide sequence:
ATGAGCAGATGGTTAGACGTAGAAGCAGGAGCGGATGATATAGATATTAATACATTGCCT
TCCAATGTTACCTTTTCGGATCTGCAAAATGATAATGAGGCTAAACTTATTATTGGAGAT
TTCGGAAGGAGTGATGATGGCCCTAGACTTAAAATTTTTAAAGGCGCCATGCAGATATCA
GACTTGACTTTACCAGATCTACCTTTGGGGGTAGTCAGTTTTTATGCTGTTGAAACAAAT
CCCCGTCCTCAACCTGTAATTGCTGTTGCTTTCAGTTCCTCCGTATACTTTTATAGGAAT
CTGAAATTGTTTTATAAATATTACCTACCTCGTGTCGAACTCAATGCTGGCGAATTAGAT
ACTTGGAAACAGCTTACAAATCCATCTAACCATAAAGAAGAAACAATCCTAAAACTCACA
GAGAGCCTACACAACATACCGCATAAAGTGTTAAGCATACAATCTAGAAACTTTCTATCT
CTCACATTGGACGAACAGCTGGAATACTTGGAAAATACTCAGGAGTTACCAAAGAAGAAA
AACGGAGAAATTGTTTGCATTTCAACCATCAGACTCTCTTCAGTTGATAAACGTGCAGTA
AGCTGTCTGGTTCTAGGTACAGAGGATGGAGAGATTATCGTGTTGGACTCCCAGACGTTT
ACACAAACAAATGTGGTTAATATAAGTCCTGTTAAGAAAACACCGTTTCAAATAGTAACG
ACCGGAGTATACAATGTGGATTACAGAATAACTGTCGCTACCAGGGAGAGAAGTGTTTGT
TTGCTAAAAAGAGACTGGAAAGAGGGACGTACTTTATTCAATACTGACGACCACATTATT
GCTATTGAAGTTTTTGCCACAGATAATAGTATTTTGGTTATATGCGCCGACAAAACCTTC
TCTTGTTATAACCGTAAGGGTAGGAAACAATGGTCCTTAAGCCTAGACCATCGCCCTATT
TGTCTTTCTCTTGTCCCAATATCTCACTTGGGCATGACGCTATCCGCGGTCGCGCTCGTA
TCCGGCCACGTGACACTCTATGACGGCAAATATCCTAGAGATAATATATTTATTAGAGAC
GTTGTCTCCGTCATGAAGTTTGGTCAGCTCGGTCAAGAGGAGCATGTTTTTACTATCATA
ACAACAAATGGCCATCTGCTGTTGAAAATATTAAAACGAACGGCTGACTTCAATTCGAAC
TCCACGGGGATGGAAACCTCTGAATCTAATATCGGTCAGAGACCGTGGCTCATACCTAAG
AAATCGAAACTGTTCCTGGAACAGGCTGTGAGGGAAAGAGAGAATCCTAAAGCTATGCAT
GAGGCGTTCCAGTATGAATTGAACCGTCTACGTTTATTAACGGCTCAGACCCTCTTGGAG
GCGTATAGGAAGTCGGATAACTTCGTTGGAACCGGCAATATGGAACCCATAAGATTATCC
GCCGAGGTGGAAGGACTAGGTCCCGTGTTTGTGGTGACCTTGATAGTACACAACACGTGC
TCCGAGCGCGCCGTCTCCGGCCTCGCCGTGTTGTTCCACGTCATCTCCACTGGATACAGA
GTCCATACACCATATACCAAGGTTCCACTGATCGCACCGGGAAATCAGTTGAAATTTCCA
ATTAAAGTTGAGGAAATATTCAGTGAGAACGTGAACCCGGATGTATTTTTTCGTAATGTG
ACGGGTCAGGCGGGGGAGGGGTCAGTCATTAAAGTGTTGCTTTTGAAGGAGGGAAAAGTA
AGCCCAGTTCTCGCAGCGACAGTGACCATGCCTCCCACTGACCCCATGATGATACCGTAC
GATAAGCTTCAGACCTCCAACTTTGGACAGAACTCATCGCAAAATTAA
Protein sequence:
MSRWLDVEAGADDIDINTLPSNVTFSDLQNDNEAKLIIGDFGRSDDGPRLKIFKGAMQIS
DLTLPDLPLGVVSFYAVETNPRPQPVIAVAFSSSVYFYRNLKLFYKYYLPRVELNAGELD
TWKQLTNPSNHKEETILKLTESLHNIPHKVLSIQSRNFLSLTLDEQLEYLENTQELPKKK
NGEIVCISTIRLSSVDKRAVSCLVLGTEDGEIIVLDSQTFTQTNVVNISPVKKTPFQIVT
TGVYNVDYRITVATRERSVCLLKRDWKEGRTLFNTDDHIIAIEVFATDNSILVICADKTF
SCYNRKGRKQWSLSLDHRPICLSLVPISHLGMTLSAVALVSGHVTLYDGKYPRDNIFIRD
VVSVMKFGQLGQEEHVFTIITTNGHLLLKILKRTADFNSNSTGMETSESNIGQRPWLIPK
KSKLFLEQAVRERENPKAMHEAFQYELNRLRLLTAQTLLEAYRKSDNFVGTGNMEPIRLS
AEVEGLGPVFVVTLIVHNTCSERAVSGLAVLFHVISTGYRVHTPYTKVPLIAPGNQLKFP
IKVEEIFSENVNPDVFFRNVTGQAGEGSVIKVLLLKEGKVSPVLAATVTMPPTDPMMIPY
DKLQTSNFGQNSSQN