| Genomic Position | scaffold3034:+ 1736-5901 |
|---|---|
| See gene structure | |
| CDS Length | 2271 |
| Paired RNAseq reads | 172 |
| Single RNAseq reads | 483 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008087 (0.0) |
| Best Drosophila hit | CG11403 (8e-113) |
| Best Human hit | probable ATP-dependent RNA helicase DDX11 isoform 1 (2e-135) |
| Best NR hit (blastp) | PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) [Acyrthosiphon pisum] (2e-165) |
| Best NR hit (blastx) | PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) [Acyrthosiphon pisum] (2e-154) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0008026 ATP-dependent helicase activity GO:0003677 DNA binding GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0004003 ATP-dependent DNA helicase activity GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GO:0000166 nucleotide binding GO:0005634 nucleus GO:0004386 helicase activity GO:0016787 hydrolase activity |
| InterPro families | IPR006554 Helicase-like, DEXD box c2 type IPR006555 Helicase, ATP-dependent, c2 type IPR010614 DEAD2 IPR014013 Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type IPR013020 DNA helicase (DNA repair), Rad3 type |
| Orthology group | MCL14250 |
Nucleotide sequence:
ATGCAGGAGGAGTTTCAGGAATTGAAAAACAAAGTTGCAAAACAAAATCTACATAGTAGT
AAAATTGATAGCTTTTTCATAAAGCAGAATAAAGATGAAAAGTCTGAGGCAACAGATGAG
ACAGAGAATGTGGTTGATGATGATTTGATTGTGGAAATTGAAAATAACAAAGATGATTCT
GATGATGAGTCGCCTTTGGAAGATGTAGAAGACAGTTTTACAAAGATTTACATAAGCAGT
AGGACACATAGTCAGCTATCCCAATTTATTGGTGAAATTAAAAGGACTATTTTTAATAAG
GGTACAAAAGTAGTAACACTCGCATCTCGACAACATTATTGTATAAACTCTGAAGTGAAT
AGATTGAAAAATGTTAGTCTCATTAATGAAAGGTGTTTAGAAATGCAAAAATCTAAAACT
AAATCCACAGCCAAAGACGAAGAGGGCAAAGTTGTGAAGAAAAGTAAGACCAAGGCCTGT
TCGGCATGTCCATACTACAATCAGAATAATATAAAAAAATTAAAGGAAAAATTGCTTGTT
GAAGTTATGGATATGGAAGAAATTGTGAAAAGTGGAAAACAAATGAAAGCATGCCCTTAT
TATGCTTCAAGAATGGCTTTAGAAGATGCAGAGGTTGCTTTGATCAGTCATGCGGGTATT
GTAAGTCATGGCGCCAGAACGGGTGTATCAATAAAATTGCAAAATAATATATTGATAATG
GACGAAGCTCATGGGCTATCAGCGGCTTTGGAAAATGCACATTCTGCACCAGTTTCACAT
AAACAATTGTCATGTGTTAAAACCTTCTTGGAGTTTTACATCAATAAATACAGATCATTA
TTGAGCAGCAGGAATTTGTTGCAGCTGAATCAAATTAATTTTGTTGTATACATTGTTTTA
ATTGTTTTAGGTATGGTATGTCCAAAATTAAATGACAAAGATGGTTCAAAAATATATACA
TTAGAAGATTTTGTCATAGAGGCTGAAATAGATCACCTTCATTTACACCCTCTTGTTGAG
TTTTGTAGAAATGTCAGATTGGCACCGAAATTGCATGGTTTTTGTATGAGGTACAGTCAA
CAAGCTCTAGCGGAAGAACATAAAAAGGATACCAATAAAAAAGGTTCCTTTAAGGATTTT
TTAAGCAACATATCTAAAAAGAGAACACAAAATGATAGTTTGAAATGTGCTCCTTTAGAC
GTTCCTAAAAATAATGGAAATACAAATTTAGAGGTCCCACCGACTGAGATATCTGCGGGC
AGTAGTTTATATGCAGTATTAGATTTCTTAGAGAGGCTTTGTGATCGCAGTGAAAACGGT
CGGGTCTTAACACAGAGTGATTCCGGCCTTCTGAAATATCTACTATTAAATCCCGCTGAA
CATTTTGCGGATGTAGTTAGCCAGTGTCGATCAGTAATTTTAGCGGGTGGTACAATGGAG
CCTATAAGTGAATTCCAAGAACTTCTTGCTTCTGATAAAACACAATTGGATAGAGTGAAT
GTTGTAAAGTGCGGACATGTTGTGCCTGCTGATAACGTGTTAGGAATATGTCTTTCAAAG
GGTCCATCTAAGCTTAATTTAAATTTCTCATATGAAAATAGATCCTCATTTGAGTTGCTA
AATGAAATCGGTCGCATTTTGAGAAATCTTTGTAATGTCGTGCCTGACGGCGTCGTATGT
TTTTTGCCATCTTATTCATTTGAACAAACTTTGTATGAACATTTAAAGAGCACGGGTGTG
TTAGAATCTGTAAGCAAAAAGAAGATTATATTTAGGGAGCCTAAGTCAGCCTCGGAAGTT
GAACAGGTGTTACAAAAATATTCTGCAGCTGTTAAAAGTAAAGTAGGCGATATCAACGGC
GCGCTCATGTTGAGTGTAGTTGGAGGGAAATTAAGTGAGGGATTAAATTTCAGCGATGAA
TTAGGTCGATGTGTGTTGGTAGTTGGAATGCCGTATCCAAATATAAAATCCTTGGAGCTT
CAAGAGAAGATGAAGTATTTGAATAAATCTACTCCTGGTTCAGGAAGCATATATTATGAA
AACCTTTGTATGAAAGCAGTGAATCAGTGCATTGGCAGAGCCGTTAGACATGCAAATGAT
TACGCCTGTGTCATTTTAGTGGATGAACGGTATTCTAGATCTCAAACAATATCAGCATTA
CCATCCTTTGTTCAGAAATCTTTAATTTCGAATTGCGTATTCGGACAAGCAATGGGCAGT
ATAGCGAAGTTCTTTGCTAGACACAAGAAGAAAAATAATGATAACAAATGA
Protein sequence:
MQEEFQELKNKVAKQNLHSSKIDSFFIKQNKDEKSEATDETENVVDDDLIVEIENNKDDS
DDESPLEDVEDSFTKIYISSRTHSQLSQFIGEIKRTIFNKGTKVVTLASRQHYCINSEVN
RLKNVSLINERCLEMQKSKTKSTAKDEEGKVVKKSKTKACSACPYYNQNNIKKLKEKLLV
EVMDMEEIVKSGKQMKACPYYASRMALEDAEVALISHAGIVSHGARTGVSIKLQNNILIM
DEAHGLSAALENAHSAPVSHKQLSCVKTFLEFYINKYRSLLSSRNLLQLNQINFVVYIVL
IVLGMVCPKLNDKDGSKIYTLEDFVIEAEIDHLHLHPLVEFCRNVRLAPKLHGFCMRYSQ
QALAEEHKKDTNKKGSFKDFLSNISKKRTQNDSLKCAPLDVPKNNGNTNLEVPPTEISAG
SSLYAVLDFLERLCDRSENGRVLTQSDSGLLKYLLLNPAEHFADVVSQCRSVILAGGTME
PISEFQELLASDKTQLDRVNVVKCGHVVPADNVLGICLSKGPSKLNLNFSYENRSSFELL
NEIGRILRNLCNVVPDGVVCFLPSYSFEQTLYEHLKSTGVLESVSKKKIIFREPKSASEV
EQVLQKYSAAVKSKVGDINGALMLSVVGGKLSEGLNFSDELGRCVLVVGMPYPNIKSLEL
QEKMKYLNKSTPGSGSIYYENLCMKAVNQCIGRAVRHANDYACVILVDERYSRSQTISAL
PSFVQKSLISNCVFGQAMGSIAKFFARHKKKNNDNK