New model in OGS2.0 | DPOGS204712  |
---|---|
Genomic Position | scaffold118:- 24027-27775 |
See gene structure | |
CDS Length | 1641 |
Paired RNAseq reads   | 6859 |
Single RNAseq reads   | 16331 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008249 (0.0) |
Best Drosophila hit   | smaug, isoform A (2e-31) |
Best Human hit | protein Smaug homolog 2 (4e-26) |
Best NR hit (blastp)   | PREDICTED: similar to MGC85099 protein [Nasonia vitripennis] (7e-48) |
Best NR hit (blastx)   | PREDICTED: similar to MGC85099 protein [Nasonia vitripennis] (1e-42) |
GeneOntology terms    | GO:0005737 cytoplasm GO:0017148 negative regulation of translation GO:0030371 translation repressor activity GO:0003729 mRNA binding GO:0003730 mRNA 3'-UTR binding GO:0000900 translation repressor activity, nucleic acid binding GO:0005515 protein binding GO:0051236 establishment of RNA localization GO:0043488 regulation of mRNA stability GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening GO:0000932 cytoplasmic mRNA processing body |
InterPro families    | IPR010993 Sterile alpha motif homology IPR001660 Sterile alpha motif domain IPR021129 Sterile alpha motif, type 1 IPR013761 Sterile alpha motif-type |
Orthology group | MCL11127 |
Nucleotide sequence:
ATGTTCGAGCAGTGGGGCACCTGCGAGCGGACGGTGGTGGCCTGCGCCCTCGCTCGAAGA
GTGCCGTGGCCAGGGTTGCGGTTGGTTCAGAGAGCGGTGGAGGCAGCCCTGCAGAACCAT
GTAGGGGATGAGCGACTCGAGAGAGATGCGAACGACGAAACGTTACTCGCCAGCCTCCTC
GCGTCCAGAACTGATGAACACGATGAAGAAGATGGCGAACGTCTCAGACAGCTCCTTGCG
CTGCTGCCTCTCCTCCGTACTGACAATGAGCGTGCTAAGAATGTGTACGTGTCGGCGACC
CCCGGCCTGGTCCAGCGCTGTGTGGACTCATCCAGGTCACCTGCAACCCCACACCTGTGT
AGACAGCTGCTGTCCTACCAACTGGTACATCCAGCCTTCACTGTACATGACCAGAGAACA
CTGACGCAATGGCTTCGCTATTTAGAAAATCACATATCTGGGAACAGAAACAGTGAGACG
CCGTGGCAGCAGCGGATAGAACCGGCCCTGTTGCAGGACACGAACATCTGGTCGGCCAAC
AACACCTTCCGCCGCACCATCGGCAAGAACGTGGACTTCCGGGGGATGTTGGACTCGTTG
GAGCACGCGGCCTACACGGACGTGTTGCAGGAGTCCTTCTCCAAGAACGGCAGGGACGTG
GATATCGGCCTGGACGGAGACGCCGCCCACTACGAGGCGCAGACCAAGTCACACCGGTCT
AATAGTCTCACGCCGCCCTCCACCAACTTCATGCAGATGTCCTCCTCGGCCGAGAACCTC
AGCGACGAGCCGTTCGTCCAGAAACCGAGGAGCTTCTCGCTATCCAGCGAGCACAGTCTG
ACTCAGCTGCGGCCCATAGGGGTGACGTATGGAACCACCGGCAGCGAGACAAGGCTGGAT
GACCTCCGGACCAACAATTTTGCGGAACATCCCGGCATGTCCACCGTGGGGCAGTGGCTC
AAGAGTCTCCGGCTGCACAAGTACGTGTGGCTCTTCACCAACATCACCTACGAGCAGATG
ATGGCCATGGACGACAAGTACCTGGAGAAACTGGGTGTGACGAAGGGCGCGCGTCACAAG
ATCCTGCTGTCGATCGCTCGTCTGTCGGAGCGGCCGTCTATCTTGGAGTCGGTTCGGAGT
GAGCTGTCTTCAGGCCGGGTGTGCAGAGCTCTGGACCGTCTCCGGAGCGTGCTGCTCTCG
CCTATGCCGCCCGGGGACCTGCCCCGGGCCGTGGTCGCAGCCCTACAACACGCGTCCGAG
TGTTTGTCGGGAGGCGCGGGATCAGTGGTAGCGGAGAACGAGCCGGAGGCCGTTGACCCC
ATGTCGCTGCATTGCTGGCTCATAGAGAAGGCTCTCCACCACGAGTCGTTCTCGTGTCCG
TCTCTCCAGTCATCTCTCCGCTGTCTCCGCCACCGCGTTCCACCTCGACAGTTCTTCCAC
CTTGTGGGAGACGCGCCTCACAGGAGACTCAAGCCCCGTTGGCGCGCCCCGGCCGCCGCC
CGCCGCCGATGGGCGCCGCCCGCCCGCGGCAAGTCCAACTCGTACCCGCCGTTCCCGCCG
CAGGTCGCACCGCCGCCGCCCCACGACTACTCCAGCCTGGACGCGCTCTGCCTGCAGATG
ACGGAGACGGCCATCGACTAG
Protein sequence:
MFEQWGTCERTVVACALARRVPWPGLRLVQRAVEAALQNHVGDERLERDANDETLLASLL
ASRTDEHDEEDGERLRQLLALLPLLRTDNERAKNVYVSATPGLVQRCVDSSRSPATPHLC
RQLLSYQLVHPAFTVHDQRTLTQWLRYLENHISGNRNSETPWQQRIEPALLQDTNIWSAN
NTFRRTIGKNVDFRGMLDSLEHAAYTDVLQESFSKNGRDVDIGLDGDAAHYEAQTKSHRS
NSLTPPSTNFMQMSSSAENLSDEPFVQKPRSFSLSSEHSLTQLRPIGVTYGTTGSETRLD
DLRTNNFAEHPGMSTVGQWLKSLRLHKYVWLFTNITYEQMMAMDDKYLEKLGVTKGARHK
ILLSIARLSERPSILESVRSELSSGRVCRALDRLRSVLLSPMPPGDLPRAVVAALQHASE
CLSGGAGSVVAENEPEAVDPMSLHCWLIEKALHHESFSCPSLQSSLRCLRHRVPPRQFFH
LVGDAPHRRLKPRWRAPAAARRRWAPPARGKSNSYPPFPPQVAPPPPHDYSSLDALCLQM
TETAID