| New model in OGS2.0 | DPOGS200739 |
|---|---|
| Genomic Position | scaffold402:+ 30056-35170 |
| See gene structure | |
| CDS Length | 2283 |
| Paired RNAseq reads | 930 |
| Single RNAseq reads | 2225 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001038 (0.0) |
| Best Drosophila hit | CG13472 (3e-55) |
| Best Human hit | tudor domain-containing protein 3 isoform 1 (8e-52) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (9e-85) |
| Best NR hit (blastx) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (3e-100) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0006397 mRNA processing GO:0003723 RNA binding GO:0005634 nucleus |
| InterPro families | IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR018351 Tudor subgroup IPR009060 UBA-like IPR013894 Domain of unknown function DUF1767 IPR010304 Survival motor neuron IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal IPR002999 Tudor domain |
| Orthology group | MCL13408 |
Nucleotide sequence:
ATGACACTCAGAGAGGACCTAATAGAGCTGGGCTGGCATTTGAGTGAAGAAGGTATAGAT
ATTATAACCGAAAACGGACAAATTGAAGATGTAAATATTTTAAGTAGGAGAGCTATAGAT
TTTGATTTAAGAGATATTGGGGATGGAGCATTTCCCGAGGATTTTCCTAAAGATCCATCA
AAATTAGAGAAACCAATAGTTGTACAAATACAAAAGATAAGAAATGTTGCTGCACCAAAA
GCTAATGAAGAATCAACATCAGCCCCACGAATGCTAAAACTGACTCTGCATGATGGGAAG
ACAACATGTATAGGTTTGGAAACAAGTCCCATATCAAATCTCAATGTTAATACTCCCCCT
GGCACCAAATTGTTAATAAATAATGAAGAGTTGGAAGTGTGTCATGGAGTTATCTGGCTA
ACACCGGATGTCATCACCGTGCTCGGTGGCAAAGTCACTCACATGATAGAGAAATGGGAA
CTTAATAGAAGTCTAGCTAAACATACTAGAGGTGGCATCGGTGTAGATGGTGGTCCACCG
CCATGGATACCATTCGGACAGAGATTGGAGGCATTGCCGATTGATAAACAATTTAAAAGC
ATACAAGATTCATCAAAACAGGACAATGCTGAGTTTGAGGCTCAAAGGAAAGGAGCTATT
GCGGAAGCTCAGAGGATGTCAGGAGTAAAGAAGGTGTTTGGTGGTGGTACTAAACCACTA
TTAGATGCAAATGTGCAGAAGATTGTTGATGCCGGTTTTTCTGAAGAGCAAGCTGAAAAT
GCTCTGAAGTACACTAAGAATAATCTTGATAAAGCATTGAGAATATTGCAGAAAAGGGAT
AATTCAGAAAACAGAAGTAAAGATAAGGCAAAGGAAGCTGATTCCTCTAAAAGAAAAGGT
CGTAACAAGGAGTCTAATGACGAAGATGCAGTTCCTGTTAAACCTTCTGGAAAAGTATCA
CTCTTTGACTTCTTAGAAGATAAATTACCAAATGTACCAGACAAAGATAAGAATAATCGT
CGCGAATATAACACGCCATCAGAAGATAGGGGCGAGAGGAGTTACAACAGTAGGGAAAGA
AATAATAATAAAAACAGTCGCTCGCACGGTTCAAGATATGATGGTCCGAGACATCGGTCG
GATAGAGGACATCACTCCTATGATAACTATCACAATTCACATAGAGAGGAAAGAAAATAT
CAAACCCAGAACGAGAAACCACCGAGGTTCCAGAAGAAATTAGAAGAGAAGAATAAGCAT
CAACAGCAGCAGCAGGCAAATAATTTTAATTTACATTACAATAACGCTTATCACAACCAT
CCTAACCAGTATCCCGAAATCAATATGCGGCACGACACGAACTTCAATGACAACCATGTG
AACCAGCAGCAAAACTATAGAAACAACATGAACCCCATGGACAACTTGATCGAGGCCACG
GCAAATCTAAATCTACTATCGAATCAAGCTAGGCCTAACGAGGAATTGTCGCCAGGCAGG
GGCTACCAGGCGCACCCGGAGCTCTATAGCCAGAAACAAGCCTATATTCCTAACCAAAAT
GTGCAAGAAATACCACCATTCAGGCGGAATAATGATATGACGTATCCCGAACACTACCAG
CGGCGACAACAGCAACAACAGCCGAATGGCTACATGGAACAACAGAATCCAATGTATTCT
AATATGAACTATATGAACCAGGGTTACAACGGCCGCCAGTATAACTATGGGACCCGTCAG
GAGTACAGCGGTCTTCGTACCGGCGGACCATTCTTGCCTGGTTCTCTGTTAGGCTTCCAG
AACGCAGCTGTCAATGAACAGGCTCGGGCGATGCTTGGCGTGGCGGATATCAACTGGAAG
GTCGGCGACAGATGTCTGGCTCTCTACTGGGAAGACAATAACTTTTACGAAGCGGAAATA
ACGGGTATATCAGCGAACACTGTTGTGGTGAAGTTTTGTGCGTACGGGAATCATGAGGAA
GTACTCAAATCTAACTGTTTACCTTATCCTAACCAGGCCCACTCTTCTGGAGACGGTGAT
ACTCATGATCCCTGTTCCTCATCAGGAGCGGGCGGATTCTCCCGCGGCGTATTCGCGCGA
CGGCGCGGCGCCCCCGCCTCCCGCCAGCCGGCCGGTGACGTCAGCCGACGCCCCTACCAT
AAGTTTTCGTTCGAGTTGACACGTATTAGGGGACAAAAGTCTTCCTGTCGGCGGAACGTC
TGTGTGGCTTATGAAAGGTCTGGGACCATCTCTATGGTGATTATAGCGGGCAAGGATAAG
TGA
Protein sequence:
MTLREDLIELGWHLSEEGIDIITENGQIEDVNILSRRAIDFDLRDIGDGAFPEDFPKDPS
KLEKPIVVQIQKIRNVAAPKANEESTSAPRMLKLTLHDGKTTCIGLETSPISNLNVNTPP
GTKLLINNEELEVCHGVIWLTPDVITVLGGKVTHMIEKWELNRSLAKHTRGGIGVDGGPP
PWIPFGQRLEALPIDKQFKSIQDSSKQDNAEFEAQRKGAIAEAQRMSGVKKVFGGGTKPL
LDANVQKIVDAGFSEEQAENALKYTKNNLDKALRILQKRDNSENRSKDKAKEADSSKRKG
RNKESNDEDAVPVKPSGKVSLFDFLEDKLPNVPDKDKNNRREYNTPSEDRGERSYNSRER
NNNKNSRSHGSRYDGPRHRSDRGHHSYDNYHNSHREERKYQTQNEKPPRFQKKLEEKNKH
QQQQQANNFNLHYNNAYHNHPNQYPEINMRHDTNFNDNHVNQQQNYRNNMNPMDNLIEAT
ANLNLLSNQARPNEELSPGRGYQAHPELYSQKQAYIPNQNVQEIPPFRRNNDMTYPEHYQ
RRQQQQQPNGYMEQQNPMYSNMNYMNQGYNGRQYNYGTRQEYSGLRTGGPFLPGSLLGFQ
NAAVNEQARAMLGVADINWKVGDRCLALYWEDNNFYEAEITGISANTVVVKFCAYGNHEE
VLKSNCLPYPNQAHSSGDGDTHDPCSSSGAGGFSRGVFARRRGAPASRQPAGDVSRRPYH
KFSFELTRIRGQKSSCRRNVCVAYERSGTISMVIIAGKDK