| New model in OGS2.0 | DPOGS201922 |
|---|---|
| Genomic Position | scaffold57:- 101016-102431 |
| See gene structure | |
| CDS Length | 1416 |
| Paired RNAseq reads | 394 |
| Single RNAseq reads | 914 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002631 (0.0) |
| Best Drosophila hit | Fish-lips (3e-55) |
| Best Human hit | leucine-rich repeat-containing protein 4B precursor (3e-20) |
| Best NR hit (blastp) | PREDICTED: similar to tartan [Tribolium castaneum] (2e-86) |
| Best NR hit (blastx) | PREDICTED: similar to tartan [Tribolium castaneum] (1e-79) |
| GeneOntology terms | GO:0005515 protein binding |
| InterPro families | IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype IPR000483 Cysteine-rich flanking region, C-terminal domain |
| Orthology group | MCL12077 |
Nucleotide sequence:
ATGACACATTTGAATGTTAGTCATAATGCTCTGAAACGATTGGACAAAGACACTTTTGTG
GGACTTAAAAGGCTTCGCGACTTAGACTTGTCGGATAATGATATTTCAAGTATACACCCA
CAAACTTTTAAAGATCTATCTGTAATAGAAACATTAGATTTATCAAATAATATGCTTGTT
ACATTTGAAGCTGATACTTTTGAACCTCTTTCATCATTGAGGACCTTATCACTAAGAAAC
AATTCTATTTTAGAAATACCTTCCGCTAATTTAATATTTCTCGTACATTTAGAATTTTTG
GACCTTTCTGAAAATCTTATTCAAGTTGTAGAAAAACATGGTATACCGTACTTAAAAGAA
TTAAAGCATTTGAATTTAAATAGCAATATAATTGAAAGTATTGATCAATTGGGTATGCAT
AACTTACCTTCGCTACGCCATCTGGATCTCAGTGATAACAATTTGACAACAATTCCAACA
TCTGCACTTTCAAAACTTACAAACTTGTCGCATTTGTATTTGAGCGGAAACTTTTTTCAA
AATATTTCGTCGCTATCTTTCCAAAGTCTCTTCCACTTAAAACATTTACACTTAAGTAGA
CTTCACGAGTTAGAAAAAATTGATGCAAGAGCCTTTGTAGATAATATAAATTTGCAAAAA
ATATGGATGAATGAAAACCTTAACGTAAGAGAGGTTCCACCGAGAGTATTTCATGGAAAT
CCAAAACTGACTCATATATATATAAAGAATAATGCCCTGGAGACTCTCGAAGCATCTCAT
TTTCCTATAGATACCCTGCAAGAACTTGAAATTTCTGGTAATCCTTTTGTATGTAATTGC
TCCATATTATGGCTGTGGAGCCTGGGAAGAGCGTGTGAAATACCTAGTAAAAAATCTGAC
AATTCAAGTACCATATTGAAAATAGATTACGAAGAAGTGAAATGTGCAGCGCCGGCACAT
TTAAGTGGTATATTATTTGTACAAATACCAGAATCCGAATTCGGATGCTCAAGTGGATGG
GTGGTAGTCGCAATTGTGGTGCTTACTGGGAGTATAATCATAAGTGTGGTCGGTGGAGTT
TTATATTTCATGGGTCCGTTAAAAAAGTGCAAAGGCGATAAATCTAAACAAGTTATGAAT
ACTGTAATGTTGAATGGAGACGTATCCAAACTATCGAATGGTTTAGGATATTCGACTAGA
ACTAGAGAGCAAGAAAATAAGCGAGAAGTGGATCGGTATTTAATGATCGGTTCAACAGTT
ACTAATAATTTCCATTCACTAAATCCTCCATGGCATAGTGTTGATAAAAGCCCATATTAT
CAAGAAGATAGCGAAGAGCACATTTACCAACAATTTGCCTATGAAACTATACCCCATCAC
AGAACACCAGAAAAACCGCATATAGTATACGTTTAA
Protein sequence:
MTHLNVSHNALKRLDKDTFVGLKRLRDLDLSDNDISSIHPQTFKDLSVIETLDLSNNMLV
TFEADTFEPLSSLRTLSLRNNSILEIPSANLIFLVHLEFLDLSENLIQVVEKHGIPYLKE
LKHLNLNSNIIESIDQLGMHNLPSLRHLDLSDNNLTTIPTSALSKLTNLSHLYLSGNFFQ
NISSLSFQSLFHLKHLHLSRLHELEKIDARAFVDNINLQKIWMNENLNVREVPPRVFHGN
PKLTHIYIKNNALETLEASHFPIDTLQELEISGNPFVCNCSILWLWSLGRACEIPSKKSD
NSSTILKIDYEEVKCAAPAHLSGILFVQIPESEFGCSSGWVVVAIVVLTGSIIISVVGGV
LYFMGPLKKCKGDKSKQVMNTVMLNGDVSKLSNGLGYSTRTREQENKREVDRYLMIGSTV
TNNFHSLNPPWHSVDKSPYYQEDSEEHIYQQFAYETIPHHRTPEKPHIVYV