| New model in OGS2.0 | DPOGS200411 |
|---|---|
| Genomic Position | scaffold451:+ 22821-26438 |
| See gene structure | |
| CDS Length | 1422 |
| Paired RNAseq reads | 47 |
| Single RNAseq reads | 123 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008988 (0.0) |
| Best Drosophila hit | ChLD3 (3e-178) |
| Best Human hit | ND |
| Best NR hit (blastp) | GA14716 [Drosophila pseudoobscura pseudoobscura] (0.0) |
| Best NR hit (blastx) | hypothetical protein AaeL_AAEL005685 [Aedes aegypti] (0.0) |
| GeneOntology terms | GO:0005576 extracellular region GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO:0008061 chitin binding GO:0006030 chitin metabolic process |
| InterPro families | IPR002557 Chitin binding domain IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR002509 Polysaccharide deacetylase IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site |
| Orthology group | MCL15872 |
Nucleotide sequence:
ATGTGGACTAGCAACGAATGTTCTAGATACTTACTCTGCTTGGAGGGGGAGGTATTTGAA
TTCAAGTGCTCTAAAGGTCTATTGTTTGATGTCAATCGGCAGTTATGTGATATGCCGCAA
AATGTTCACAACTGTGACGTAACAACAGAGACGCTTATACCAAAACCGCAGTTAGAAAAT
GCGAAATGCGCGAACGAAACCCATCTGGGATGCGCTAACGACATGTGCATGCCCGCAGAA
TATTTCTGCGACGGTGCCTTCGACTGCGAAGATAATTCTGATGAGGGTTGGTGTGACGTA
ACCTACGACCCCAACGCTGCTCTCCCGTGCGATCCCGGATTATGTCTTTTACCGGAATGT
TTTTGCACAAAACACGGCAACGAAACGCCGAACCACATAGTTCCGAGTCAGACTCCCCAA
ATGATAACATTGACTTTCAACGGTGCGGTAAACCATGAAAACTGGGATATATACACTAGA
CAGCTGTTCACTTTGGATAGAACTAATCCCAACGGATGTCCTATAAAGGCAACGTTCTTC
GTATCACATCCGTACACCAATTATAGGCACGTGCAGAAACTGTGGAACGACGGTCACGAA
ATCGCTGTTCATTCAATCACCCATCGTGGCCCAGAGGAGTGGTGGTCCAAAAACGCTACA
GTCGAAGAATGGTTTGATGAAATGGTTGGACAAGCAAATATTATAAACAGATTTAGCAAA
GTTTGGATGGAAGACTTCAGGGGTCTAAGGGTTCCGTATCTGTCTGTGGGTTGGAATAGG
CAGTTTCTAATGATGCAAGAATTCGGGTTTGTTTACGACGCTACAGTTGTAGCACCAGCG
GTAGACCCACCTTACTGGCCGTATACTCTGGACTACAAAATGCCTCACTCTTGTACTGGA
AATAATCAGTACTGTCCAACAAGAAGCTATGCAGGCCTTTGGGAGATGGTCATTAACCCG
CTAATTTACGGAAAACATGTTTGTGCCACATTAGAATACTGTCCAACCAACCTCAACGGG
GACGACATATATCAGATCCTGATGAATAACTTCAAAAGACATTATTTAAAAAATAGAGCT
CCGTTTGGAATACATCTGAACGCGACTTGGCTTAAAAATAATGAATATCTGGCAGCTTTC
AGGAAATTCACAGATGAGTTGCTAAAACTTAATGACGTTTACTTTGTGACATATCGCGAA
GTCATTGATTGGATAAGGAGACCAACGCCAGTGTTGCAACTAAAGAAATTTCAACCATGG
CAGTGTAATAATAAACAATTTCAGGAATCTGATATTGCTTGCGGCAAACCCAAGACTTGC
AAACTACCCTCGAAAGTTCTAGAACATGATAAATATATGATAACTTGCATGGATTGTCCA
AAGAGTTATCCATGGATAAGAAATGAGTTTGGCTTAGAATAG
Protein sequence:
MWTSNECSRYLLCLEGEVFEFKCSKGLLFDVNRQLCDMPQNVHNCDVTTETLIPKPQLEN
AKCANETHLGCANDMCMPAEYFCDGAFDCEDNSDEGWCDVTYDPNAALPCDPGLCLLPEC
FCTKHGNETPNHIVPSQTPQMITLTFNGAVNHENWDIYTRQLFTLDRTNPNGCPIKATFF
VSHPYTNYRHVQKLWNDGHEIAVHSITHRGPEEWWSKNATVEEWFDEMVGQANIINRFSK
VWMEDFRGLRVPYLSVGWNRQFLMMQEFGFVYDATVVAPAVDPPYWPYTLDYKMPHSCTG
NNQYCPTRSYAGLWEMVINPLIYGKHVCATLEYCPTNLNGDDIYQILMNNFKRHYLKNRA
PFGIHLNATWLKNNEYLAAFRKFTDELLKLNDVYFVTYREVIDWIRRPTPVLQLKKFQPW
QCNNKQFQESDIACGKPKTCKLPSKVLEHDKYMITCMDCPKSYPWIRNEFGLE