| New model in OGS2.0 | DPOGS214163 |
|---|---|
| Genomic Position | scaffold49:+ 22723-26631 |
| See gene structure | |
| CDS Length | 1611 |
| Paired RNAseq reads | 2300 |
| Single RNAseq reads | 6297 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006208 (2e-10) |
| Best Drosophila hit | CG11266, isoform B (5e-147) |
| Best Human hit | RNA-binding protein 39 isoform b (5e-137) |
| Best NR hit (blastp) | RNA-binding region-containing protein, putative [Pediculus humanus corporis] (6e-176) |
| Best NR hit (blastx) | PREDICTED: similar to CG11266-PB, isoform B [Apis mellifera] (8e-164) |
| GeneOntology terms | GO:0005681 spliceosomal complex GO:0008380 RNA splicing GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003723 RNA binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR006509 Splicing factor, CC1-like IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL11920 |
Nucleotide sequence:
ATGGCTGAAGATTTAGATGTTGAAGCAATGTTAGAAGCACCTTATAACAAATCGGATAAC
ACTTCCTCTTCAAAGCATCGGCCGGAGAAGTATTCCGAAAAAAACAGAGACAAAGATAAG
GACGGAAGTCGAAGGAGGAGTCGTTCAAAGGACCGGGAAAGAAGACGATCGCGCGATAAG
GATTCTAGACGTTCTAGGGAAAGGGATGACAAACGAGAAAGAGACCGCGACAAGGATAGA
GACAGAGATCGCAATCGTGACCGTGAACGTCGCGACCACGACAAGGATCGTAACCATAGA
GATAAGGATAGGGATAAGGACAGGGATCGTGAAAGAGATAGGGAACGTGAAAGAGATAGA
GAAAAGAGACGTAGTAAAGATAAAGTTAAGGAACGTAGTCGTGAAAGGGAAAGAAGCCGT
GACCAACATCCTCCTAAAAGAGAAAAAAGTCGCGATAAGGAAAGAGAGAGAAGCGAATAT
AGATCAAAATCAAGAGGAATTGAACCCAAGTTGGATGACCTACCTCCAGAAGAAAGGGAT
TTGCGCACTGTATTTTGTATGCAATTATCTCAACGTATTAGGGCTAAGGATTTAGAAGAG
TTTTTTTCCTCTGTTGGTAAAGTAAGAGATGTAAGACTTATCACATGCAATAAGACAAGA
AGATTTAAGGGAATAGCCTATATTGAGTTTAAAGATGCTGAATCTGTTCCCTTGGCTTTG
GGTTTAACAGGACAAAAACTACTGGGTGTTCCTATTATAGTTCAGCATACCCAAGCTGAG
AAAAACAGGGTTGGCAACACCTTGCCCAACTTAGCACCAAAAACTAGTAATGGTCCTACT
CGATTATATGTTGGCTCACTTCATTTTAATATTACAGAAGACATGCTTAGAGGAATCTTT
GAACCATTTGGTAAAATAGATCATATACAACTAATGACCGATCCTGATACTGGAAAAAGT
AAAGGCTATGGTTTTCTGACATTCCATCACGCAACAGATGCAAAGAAAGCAATGGAGCAG
TTGAATGGATTTGAGCTTGCAGGTAGACCAATGAAGGTTGGAAATGTGACTGAGCGAGCA
GATGGTGGTTCAAGCACACGGTTTGATGCTGATGAACTAGACCGAGCTGGAGTTGATCTG
GGTGCTACCGGACGCCTTCAACTTATGTTCAAATTAGCTGAAGGCACAGGTTTACAGATA
CCTCCAGCAGCGGCATCAGTATTGATGGGCGCCGGCTCAACTTTAGTAGCGCCTCAACCA
CAAGTCGCACCTCCTATTGCTACACAATGCTTCATGCTCAACAACATGTTTGACCCATCA
TCGGAATCGAACCCCAGCTGGGACATTGAGATAAGGGATGACGTCATCAGCGAATGCAAT
AAACATGGCGGAGTATTACACGTGTACGTTGATAAGGCGTCTCCACAGGGAAATGTGTAC
TGCAAGTGTCCAACAATAGCAACAGCTGTGGCGTCTGTGAATTCATTGCACGGCCGTTGG
TTTGCGGGGAGGGTCATAACCGCAGCTTACGTGCCCCTTGTCAATTATCATTCACTGTTC
CCAGACGCGATGACTGCACTAACACTACTATTGCCTTCTAAACAACGATAA
Protein sequence:
MAEDLDVEAMLEAPYNKSDNTSSSKHRPEKYSEKNRDKDKDGSRRRSRSKDRERRRSRDK
DSRRSRERDDKRERDRDKDRDRDRNRDRERRDHDKDRNHRDKDRDKDRDRERDRERERDR
EKRRSKDKVKERSRERERSRDQHPPKREKSRDKERERSEYRSKSRGIEPKLDDLPPEERD
LRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL
GLTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIF
EPFGKIDHIQLMTDPDTGKSKGYGFLTFHHATDAKKAMEQLNGFELAGRPMKVGNVTERA
DGGSSTRFDADELDRAGVDLGATGRLQLMFKLAEGTGLQIPPAAASVLMGAGSTLVAPQP
QVAPPIATQCFMLNNMFDPSSESNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGNVY
CKCPTIATAVASVNSLHGRWFAGRVITAAYVPLVNYHSLFPDAMTALTLLLPSKQR