New model in OGS2.0 | DPOGS213360  |
---|---|
Genomic Position | scaffold671:+ 4511-8033 |
See gene structure | |
CDS Length | 1002 |
Paired RNAseq reads   | 150 |
Single RNAseq reads   | 421 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009165 (3e-111) |
Best Drosophila hit   | syntaxin 16 (5e-57) |
Best Human hit | syntaxin-16 isoform b (6e-47) |
Best NR hit (blastp)   | GK19716 [Drosophila willistoni] (9e-70) |
Best NR hit (blastx)   | GK19716 [Drosophila willistoni] (8e-65) |
GeneOntology terms    | GO:0005484 SNAP receptor activity GO:0005886 plasma membrane GO:0007269 neurotransmitter secretion GO:0016192 vesicle-mediated transport GO:0016081 synaptic vesicle docking involved in exocytosis GO:0016021 integral to membrane GO:0005794 Golgi apparatus GO:0000139 Golgi membrane GO:0006886 intracellular protein transport GO:0005764 lysosome |
InterPro families    | IPR006012 Syntaxin/epimorphin, conserved site IPR000727 Target SNARE coiled-coil domain IPR006011 Syntaxin, N-terminal IPR010989 t-SNARE |
Orthology group | MCL12435 |
Nucleotide sequence:
ATGGTATCGCGAACTTTGACGGAAGTGTTTGTTCTTATGCGAAATAATGCTATTCACTCT
CGACAAATATTCGCTGAACAGTCTAATGAGTCCGAGCATGTAAGGCTCATGAGATCCAGT
GGCCATGATCTGGAGGCAGGTCCTGAGCCACGGTCAGATGCCCCTCCTCCATGGAGTGAT
TCACTAGAAGAGGCCCACTACATTATTACGAGGTTAAGAACTAAGCTATCCGAGTTGCAA
TCCCGACACCAGCATCAGCTGTCTCGTCCAGGTCTGGACTCAAGCCACGAGCAGCATATA
GAGCGTCTATCAACAGATATAGCTAGGCACTTCACGCAAGCACACGCAAGACTGACAGCA
ATCAGGGCTCAAGTCAGACACGGCAACAAAACTGAACAGAAGTTAGCAACTAATGTGGTG
CTGGCGCTGGTGACGATATTACAAGATCTCAGTGTAACCTTCAGGACCTCGCAGTCCAAC
TATTTAAGGTCCCTCACATCAAGGGAGGAGAGGTCAAACGCTTACTTTGACTTACCCAAC
TTTGAAGAGCTCAGTTTACAAGACAATGACTTGATACCGGGGCTCACAAACAACCAGACT
GACCTATTATTCTCACTACCGAGCACCTCAGCACAGAATCATGACGACGTGGACCACATG
TTCCAGAAGCCAGCGCTGAATCAGAAACAGCTCCTATTGATGCAACAAGAAAATACCAAA
GAAATATTAGAGAGAGAGGAAGAAGTTAATAAAATAGTGAAATCAATAGTGGATTTGAAC
GATATCTTCAAAGACTTAGCCAATATGGTCCACGAACAAGGCACTATATTGGACAGAATA
GACTATAATATCGAACAAACCCAGGTTCAAGTGCACGAAGGTTACAAGCAATTGCAGAAA
GCTGAGAGATACCAACGAAAGAATAGGAAAATGCAGTGTATACTCTGCCTGTCCTCTGTT
CTCATAGGTCTAGTCATACTGTTGATCATCGTTAAGAGTTAG
Protein sequence:
MVSRTLTEVFVLMRNNAIHSRQIFAEQSNESEHVRLMRSSGHDLEAGPEPRSDAPPPWSD
SLEEAHYIITRLRTKLSELQSRHQHQLSRPGLDSSHEQHIERLSTDIARHFTQAHARLTA
IRAQVRHGNKTEQKLATNVVLALVTILQDLSVTFRTSQSNYLRSLTSREERSNAYFDLPN
FEELSLQDNDLIPGLTNNQTDLLFSLPSTSAQNHDDVDHMFQKPALNQKQLLLMQQENTK
EILEREEEVNKIVKSIVDLNDIFKDLANMVHEQGTILDRIDYNIEQTQVQVHEGYKQLQK
AERYQRKNRKMQCILCLSSVLIGLVILLIIVKS