| New model in OGS2.0 | DPOGS212752 |
|---|---|
| Genomic Position | scaffold3:+ 302521-306682 |
| See gene structure | |
| CDS Length | 2241 |
| Paired RNAseq reads | 567 |
| Single RNAseq reads | 1646 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013204 (3e-38) |
| Best Drosophila hit | partner of drosha (4e-106) |
| Best Human hit | microprocessor complex subunit DGCR8 isoform 1 (6e-57) |
| Best NR hit (blastp) | PREDICTED: similar to double-stranded binding protein, putative [Tribolium castaneum] (1e-118) |
| Best NR hit (blastx) | PREDICTED: similar to double-stranded binding protein, putative [Tribolium castaneum] (3e-113) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0031053 primary microRNA processing GO:0035195 gene silencing by miRNA GO:0007446 imaginal disc growth GO:0005634 nucleus |
| InterPro families | IPR001159 Double-stranded RNA-binding IPR014720 Double-stranded RNA-binding-like |
| Orthology group | MCL13310 |
Nucleotide sequence:
ATGAGTGAAGAGCTGAGTCCACCTCCCAAGAAAACGAAGGTCGAGTTCGAAGCTGAGACA
GGAGAGATAGACTTCGCTGACGATACTATAGTGGAAAACAAGTTTGATATTAAGGAGCGC
TGCGAGAACTTCCTCACCACCCAGGAGTTGGAACAGCTCCGAGAGTTCAAGGTTCTGGAC
GAAGTGAAAGCCAACGAAGATGACAGCAATGATGACAATTCAGAGAAGAGTTCCACTGGA
GTGCCTGAAGAGGAATTAGATAAGATGTTGGACGAAAATCTGCCAGAGGATTTTAAGACG
GCTCCGAAACCCAAAGAGAAGACGTACGTCGCGAGAACCAAAATTGTGCTTGAAGAAAAG
GGTGTAAATCAGTTTGAGAACCTTCCGCTGGACTGGATGATGATACGCCATCACAGCGGA
ATGCCGATATACATGCACCGAAGCACGCGCGTCTGCACCCTGTCTAAACCGTACTTCATC
GGCAAAGAGAACACTAGGAGACACGACATACCGATCAGCGCTATACCCTGCTTATTGTAC
AGACGTGCGCTGGAAGAGGAAGAAAAACAGAAGGAAATAGACAGGCAAATAGAAGAGCAG
ATTAAAAATGGGATGTACGCGCAGAATCAGGGCGAGGGTATAGTCATTAAAAACGAAGAA
GACGCGTCCACGCAGAATACTGGTGATTTTCCACAGATTTCCGTCCTGCCGGAAATAAAA
TTGCGGACCGATTTACAGTTCGATAGAAATGTTAATATACAGCAGACGGAGATCAAACAG
GACGTGAGTGATAGCAACGATGCAGAGCCGGAGTCGGTGGAGCAGAAATACTCAGTAACA
AAAGACAGCCAGAACAATATACATGACGATGTCACACAAGTAGCTGATAAAGCTATGACT
GAGATAGACAAGAAATGTCCGCTGGCCATGATCACGAACAACGGAGACGATAAGTATGAG
AGCCAAGTGGAATACGAGGTCACAGTCAAGATAGAAAACGAGACATCGGATAGCGAGGAC
ACTATTAAGAAAGAAGTAATTGACAACGAAAACAACGAGCTGACCTCAGACGACTTCAAA
GAGAGTGAGCGGAATGAAAATGGCGGTGATGTGGAGGGGATACCGCACCGACAGCCGGTG
GTGTTGCCAGGTGGCATAGTGATGCCCCCGCCGCGCGTTGAGTCGGTCAACACCAGCTGG
AAAACGAAACATTTGACCCCAGAACAGGTCACCGAGTATTGCAAAAGGCTCTTCCAGTTT
AAGAGCCTTAATATAATGCATTTCAATCGTTGGACGGATCGTCGGAAGTACACAAAAGCC
AGGAAGACGCTCCAATACCCTACACTACCAGCGGGCACCACCCTTATAACTATACCGGCT
CAAAATGGTGGCAAAACAGCGAAACGCGACTGGGTCATGAATATGAACGGCCGGAGCTAT
CTCTCAGTGTTCCACGAGTACGTCTGTCGGGCCTTGCAGAAACAGCCTGTGTACGAATAC
AAACAACTAGAGAACGCAGCTACGCCGTACCAAGCTGCCGTGTATATCGGCGGTATGCAG
TACGGCGTGGGCTACGGGTCGAGTAAGAGACAGGCGAAGTACGCCGCAGCTAGAGCATCC
ATACACATCCTGATACCAGAGATGAAGAACCACCTCGAGCCCCCCGCCGCCGCTCCGCAG
AACCCCGAGACTGACTTCACGTTTTTCGACTACGTCGGTATAGAGGACCCTCGTATCGCC
GAGTTCTGTGCAGCGACTTGCGAGCCTTCGCCCCACGCTATACTGAGGACATGTCTGTTA
AGGAACTTCGGCGCCGGAGATAGGCACATCCACACTGAGATGAAGAAACTGGAGTATCAG
AAGACCGAGCTGACTATGACGGTGGGGAAACATACCGCCACTGTGGTCTGCAAGAACAAG
AAGACCGCCAAGCAGCGAGCGTCGCAGGCTATACTACAGGCTCTACATCCTCACGTCCGC
TCGTGGGGTTCGCTGCTACGTCTCTACGGCTCGAGATCGGTGAAGAGCTGCAAGGAAAAG
AAGCTGGAGGAGCAGCAGATCACGCTGCTACAGGACAAGGCCAGACAGAACGAGCCCAAC
TACGCTGTACTGGACAAGCTGAGACACGAGATGATAAAGCTAAAGGAAAGAGATGAGGCC
GTTGTACCAATCGGAACGCTCCTACTGACCGACGACCTGCCCACGCACTCCGGATCCAAT
TTGAATAATGTTGACTTGTGA
Protein sequence:
MSEELSPPPKKTKVEFEAETGEIDFADDTIVENKFDIKERCENFLTTQELEQLREFKVLD
EVKANEDDSNDDNSEKSSTGVPEEELDKMLDENLPEDFKTAPKPKEKTYVARTKIVLEEK
GVNQFENLPLDWMMIRHHSGMPIYMHRSTRVCTLSKPYFIGKENTRRHDIPISAIPCLLY
RRALEEEEKQKEIDRQIEEQIKNGMYAQNQGEGIVIKNEEDASTQNTGDFPQISVLPEIK
LRTDLQFDRNVNIQQTEIKQDVSDSNDAEPESVEQKYSVTKDSQNNIHDDVTQVADKAMT
EIDKKCPLAMITNNGDDKYESQVEYEVTVKIENETSDSEDTIKKEVIDNENNELTSDDFK
ESERNENGGDVEGIPHRQPVVLPGGIVMPPPRVESVNTSWKTKHLTPEQVTEYCKRLFQF
KSLNIMHFNRWTDRRKYTKARKTLQYPTLPAGTTLITIPAQNGGKTAKRDWVMNMNGRSY
LSVFHEYVCRALQKQPVYEYKQLENAATPYQAAVYIGGMQYGVGYGSSKRQAKYAAARAS
IHILIPEMKNHLEPPAAAPQNPETDFTFFDYVGIEDPRIAEFCAATCEPSPHAILRTCLL
RNFGAGDRHIHTEMKKLEYQKTELTMTVGKHTATVVCKNKKTAKQRASQAILQALHPHVR
SWGSLLRLYGSRSVKSCKEKKLEEQQITLLQDKARQNEPNYAVLDKLRHEMIKLKERDEA
VVPIGTLLLTDDLPTHSGSNLNNVDL