New model in OGS2.0 | DPOGS212770  |
---|---|
Genomic Position | scaffold3:+ 530116-531715 |
See gene structure | |
CDS Length | 1224 |
Paired RNAseq reads   | 567 |
Single RNAseq reads   | 1661 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013140 (0.0) |
Best Drosophila hit   | Arc42 (9e-164) |
Best Human hit | short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor (8e-153) |
Best NR hit (blastp)   | Arc42 [Drosophila willistoni] (0.0) |
Best NR hit (blastx)   | Arc42 [Drosophila willistoni] (8e-171) |
GeneOntology terms    | GO:0003995 acyl-CoA dehydrogenase activity GO:0016455 RNA polymerase II transcription mediator activity GO:0006367 transcription initiation from RNA polymerase II promoter GO:0016592 mediator complex GO:0050660 FAD binding GO:0055114 oxidation reduction GO:0048813 dendrite morphogenesis |
InterPro families    | IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR009100 Acyl-CoA dehydrogenase/oxidase IPR006089 Acyl-CoA dehydrogenase, conserved site IPR006090 Acyl-CoA oxidase/dehydrogenase, type 1 IPR006092 Acyl-CoA dehydrogenase, N-terminal |
Orthology group | MCL13012 |
Nucleotide sequence:
ATGTTAAGATTAATAAGCAGAGCCGTAAACGTGTCCGTGCAATCTTCATCGAGTAGTTCC
AGATGTATAGCTTCACTATCAGCTCTACCTGATACATATCAAATGTTATATAAAACCTGT
AGGGATTTCGCTGAGCAAGAACTGAAACCAAATGCAGCGAAATACGACAGAGAACACCTG
TACCCCGCAGCTGCTATAAAAGAAATGGGTAACTTGGGCCTCATGGCCATAGCGACGCCA
GAAGAATTGGGTGGAACAGGGCTGGACTACTTGGCATATGCCATAGCCTTAGAAGAGATC
TCAAGGGGATGTGCATCTGCTGGAGTAATTATGTCAGTGAATAACTCACTTTACCTGGGC
CCTATCTTGCACTGGGGCACCGATAAACAAAAAGCTGACTTTGTAACCCCATTCTGTTCA
GGGGATACAGTTGGATGTTTTGCCCTGTCTGAACCTGGTAATGGATCAGATGCTGGGGCT
GCATCAACCATAGCAAAAGATGCAGGTGACAAGTGGCTCATCAATGGCACAAAATGTTGG
ATCACAAATGGCTATGAAAGCAAAGCAGCCGTAGTATTCGCTACTACCGACAAAAACTTG
AAACACAAGGGTATTTCAGCATTCATTGTGCCAAAACCAATTAAAGGTTTTGAACTTGGT
AAAAAGGAAGATAAGTTGGGTATCAGAGGTTCGTCGACATGCTCACTGATGTTTGAGGAT
TGCGAAATTCCTAAAGAGAATATCCTGGGAGAGCCAGGATTTGGTTTTAAGATTGCCATG
ATGACGTTGGATGCTGGTAGGATTGGTATTGCCTCACAGGCTTTAGGCATCGCACAGGCA
TCCTTAGATGTAGCGGTGGAGTATGCGTCAAAACGAATTGCATTCGGCAAACCCATAATG
AAGCTTCAGGCTATCCAAAACAAACTTGCCGACATGGCATTACAGCTTGAATCGGCCAGG
TTATTGACATGGAGGGCGGCATGGCTCAAAGACAATAAAAAGCCATACACTAAGGAAGCT
GCCATGGCTAAGTTGGCTGCCTCCGAAGCAGCTACATTTGTATCTCATCAATGCATACAG
ATTCTGGGTGGTATGGGCTATGTGTCGGATATGCCAGCGGAGAGGCATTACAGGGATGCT
AGGATCACTGAGATCTACGAGGGCACATCGGAAATACAACGACTGGTTATAGCCGGACAG
ATCATTAAGGAATACGGTGTTTAA
Protein sequence:
MLRLISRAVNVSVQSSSSSSRCIASLSALPDTYQMLYKTCRDFAEQELKPNAAKYDREHL
YPAAAIKEMGNLGLMAIATPEELGGTGLDYLAYAIALEEISRGCASAGVIMSVNNSLYLG
PILHWGTDKQKADFVTPFCSGDTVGCFALSEPGNGSDAGAASTIAKDAGDKWLINGTKCW
ITNGYESKAAVVFATTDKNLKHKGISAFIVPKPIKGFELGKKEDKLGIRGSSTCSLMFED
CEIPKENILGEPGFGFKIAMMTLDAGRIGIASQALGIAQASLDVAVEYASKRIAFGKPIM
KLQAIQNKLADMALQLESARLLTWRAAWLKDNKKPYTKEAAMAKLAASEAATFVSHQCIQ
ILGGMGYVSDMPAERHYRDARITEIYEGTSEIQRLVIAGQIIKEYGV