| New model in OGS2.0 | DPOGS212782 |
|---|---|
| Genomic Position | scaffold3:+ 949291-955597 |
| See gene structure | |
| CDS Length | 1737 |
| Paired RNAseq reads | 559 |
| Single RNAseq reads | 1571 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013223 (3e-72) |
| Best Drosophila hit | members only (4e-27) |
| Best Human hit | nuclear pore complex protein Nup88 (6e-33) |
| Best NR hit (blastp) | hypothetical protein BRAFLDRAFT_122018 [Branchiostoma floridae] (3e-50) |
| Best NR hit (blastx) | hypothetical protein BRAFLDRAFT_122018 [Branchiostoma floridae] (2e-48) |
| GeneOntology terms | GO:0005634 nucleus GO:0005643 nuclear pore GO:0005829 cytosol GO:0015031 protein transport GO:0051028 mRNA transport GO:0055085 transmembrane transport |
| InterPro families | IPR015943 WD40/YVTN repeat-like-containing domain IPR019321 Nuclear pore complex, nucleoporin 88 |
| Orthology group | MCL14156 |
Nucleotide sequence:
ATGGCCGCCGCAATCACATTATCGCGGCGACCTAAGGGCGAGACCACGAATACTTTCCCG
GTATTTATCACGGGATATAATGGATGGATCCCGGAGTTTTTTATACCGATAATGGCCGCT
GCGAGTTCGACTGTAGACGAGAGGTTCCTGTACTCTCAAGGCGAGATACACAGAGTACAC
TGGCATCCGAAATCTCTCTCCCACATATTGGTGCTGGTCTCGGACAACACGATGAGACTG
TACAACATAGCACTGAAGACTGGACCGAAATTGGTGAAAATCTTCACAATCGGACCCAAG
CCGGCGGGAGCGTTGGGTCAGACTGTGTTGGATAGTTTAGGAGATACAGCGATAGACTTC
ACACCTACACCAGACAACGAATATCTGTTGATACTCAGCGGCAATGGTGACGTGTACATG
CTGCAGTGCGAGTTGGATATGAAAAATACCATAACAGCTAAATTGAGGGGTCCCCTGGCG
ATGTACCCCCCAGCTGATGATAATTACGGCTCCGAGTCCTGCTCCATAACGGCTGTGGGG
TCAGCGAAGACCCCAACGCTGGTTATCATAGCCAGCGCTTCAGCAACCCTGTACCATTGC
CTTCTATTGCCAAACTCCACAGACAAAGAAGAGGACGACGGCTTCGCACTCTACGTTCTA
GAGTCGGTCGAATTGAATCTCGTGCAGAACAGCGACAGCCACAACAGCAACATATATCCA
GTGCATTTATATCCGTCCGGCCGCGGTTCGTATGTGTGTGTTCACGATAGCGGGGTCCAT
TCTGTGTTACTACCAGCGGCTAACGTCCTGCATGAATACGCTTCAGCTCGCGAAGATGAG
ATGGAATCAGTACTTCAGCTAATGTATAAGGAGCCGAGCAAAGCACGTCACCTCATATGC
GGTAGCAATCCGCCTGTTGGGGTGACCTTCACAGAACCGCCCCTCCAGACGATCATCATA
TTATGCCAGGAAGGTGACCTCTTGACCAGAACCGTAGATCCCTTCGACCTAGAGGAACAT
CTCTATAAGGAGGTACAATTGAAAAACCCGGCTCTAGAACAAGACGATATCAACGCTATA
CTAAAAGAGAAACAGAAGATAACTTTCAGTCACATAATACACGAGGTTCTCCAACGTAAT
TCATCACAGCCGATTTTGAAGTTACAATCCGCTCCAAGGACCAAGCAGTGTTTAGAGTTA
CTCACCCAAGCGACTGTGAGACTCGGCAGCGAATATATGGATAAACAGAAACGCGCTTGT
GACGTCATCACTAGGAAGATGGCCGCCCTCAGCGCCCTCTCAAGGCAACACAAGGAATGG
CTACGGGAGCTACAGAAAGAAATTGAAGATGTTAAACTCACGTCAGTGGTGTTGAAGGAG
AAGCGTGCGTTGGCGGAAAAGCATCAAGAAGATATAAAGTACAGATGTTCTATGGTGTCC
CGAGCTTTGCGAGCTGGCTCCGGACAATCGGAAGACGAGAGAAGACAGCTGAAAGAGCTG
GAAGAAGTTAGAGTGCGGACACAACAGCTGCAAGGACAGCTGGAAGATACCAGAAGCCTG
GTCCGGAGTAGAGGAATACAGATAAGGAATTGGCAAGAAGATTATATGAAGAAGAACACG
GTTCTGGGTAAATCTCACAGTGACAGCATCACATCTATACTGCAGCAACAGACAACACAA
ATATCGACACTCATAGAAGAAACGAAGCTACTGAAGGATCAACTCGGGATCGTTTAA
Protein sequence:
MAAAITLSRRPKGETTNTFPVFITGYNGWIPEFFIPIMAAASSTVDERFLYSQGEIHRVH
WHPKSLSHILVLVSDNTMRLYNIALKTGPKLVKIFTIGPKPAGALGQTVLDSLGDTAIDF
TPTPDNEYLLILSGNGDVYMLQCELDMKNTITAKLRGPLAMYPPADDNYGSESCSITAVG
SAKTPTLVIIASASATLYHCLLLPNSTDKEEDDGFALYVLESVELNLVQNSDSHNSNIYP
VHLYPSGRGSYVCVHDSGVHSVLLPAANVLHEYASAREDEMESVLQLMYKEPSKARHLIC
GSNPPVGVTFTEPPLQTIIILCQEGDLLTRTVDPFDLEEHLYKEVQLKNPALEQDDINAI
LKEKQKITFSHIIHEVLQRNSSQPILKLQSAPRTKQCLELLTQATVRLGSEYMDKQKRAC
DVITRKMAALSALSRQHKEWLRELQKEIEDVKLTSVVLKEKRALAEKHQEDIKYRCSMVS
RALRAGSGQSEDERRQLKELEEVRVRTQQLQGQLEDTRSLVRSRGIQIRNWQEDYMKKNT
VLGKSHSDSITSILQQQTTQISTLIEETKLLKDQLGIV