| New model in OGS2.0 | DPOGS203331 |
|---|---|
| Genomic Position | scaffold6:- 208289-228121 |
| See gene structure | |
| CDS Length | 2493 |
| Paired RNAseq reads | 207 |
| Single RNAseq reads | 615 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002021 (0.0) |
| Best Drosophila hit | CG9095, isoform B (0.0) |
| Best Human hit | sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 (9e-26) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC002984 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC002984 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005488 binding GO:0007155 cell adhesion |
| InterPro families | IPR001304 C-type lectin IPR000436 Sushi/SCR/CCP IPR016060 Complement control module IPR016186 C-type lectin-like IPR016187 C-type lectin fold IPR008979 Galactose-binding domain-like IPR018378 C-type lectin, conserved site IPR006585 Fucolectin tachylectin-4 pentraxin-1 |
| Orthology group | MCL16295 |
Nucleotide sequence:
ATGGATGTCCTCTGCGTTTGTGTTCTTCTCGCTTTAGCTGAAGGTTTGGCAGCTTCTACT
TGCGGTTTCCCTGGAGCTCCTGCTCATTGCAATGTTGCATTTTCTGACGAGGGTCTCACG
GAAGGCACCGTGGCCACATACGCTTGTGAGCGAGGGTTCGAACTCCTCGGACCGTCTAGA
AGGCTCTGTGATAAAAACGGCAAATGGACCCCCGATGGGATACCATTCTGTGTATTAAAT
GTAGCGGCCGGCAAGGCTCCGATGCAGATATCGACGGAGGACGGCGGTGTACCACAGAGG
GCCCTAGATGGCAGCACATCAGCGGCCTTTAACGCTGAAACTTGCACCCTCACTAAAACG
GAACGGGTCCCATGGTGGTACGTAAACCTCCTCGAGCCATACATGGTGCAGCTCGTCCGC
CTCGACTTTGGCAAGCCTTGCTGTGGTGTGAACAAACCCGCAGTCGTGGTCGTGAGAGTC
GGTAATAATCGTCCGGATCTCGGGACGAATCCGATTTGCAACCGATTCACCGGTTTCCTA
GAGGAAGGCCAGCCTTTGTTCCTGCCATGCAATCCGCCGATGCCCGGAGCTTTCGTCAGC
GTTCACCTGGAAGGCTCGAGCCCCAGTCAGCTTTCTATTTGCGAGGCGTTCGTTTACACA
GATCAAGCGCTGCCGATAGAAAGATGTCCTCAATTCAGAGATCAGCCTCCGGGCAGCACG
GCTACATATAATGGCAAATGCTACATATTCTACGACCGTCAGCCAGCTGACTTCAGAGAC
TCGCTCGGATTCTGTCGCTCTAGAGGCGGCACTCTGGTGGACGAGAGCAATCCGGCGTTA
CAAGGATTCATCAGCTGGGAACTGTGGAGACGACACCGGAGCGACAGCAGCAGTCAGTAT
TGGATGGGAGCCGTCCGCGATCCCCAGGATCCTGGTAACTGGAAGTGGGTGAACGGTAAA
GACGTCACCGTGTCTTTCTGGAACGCCCCGGGCGGGAGCGAGGGCTGCGCTAGGTTTGAC
GGTAGCAAGGGCTGGCTCTGGGCCGACACGGACTGCCAATCAAAACTAAACTATATCTGT
CAACACCAGCCGAAAGCGTGTGGTCGGCCGGAACAGCCGCCGAATTCGACGATGACGACT
GAGAGTTTCGATGTCGGAGCGACCGTTGAGTACGCGTGTGATGAAGGTCACCTGTTAGTG
GGACCTACCGTCCGAACCTGCATGGACACGGGCTTCTACGACGAGTTCCCACCGGTCTGC
AAAAGGATAGAATGCGGCTTCCCAGCGGATATATCCCACGGGGGCTACCAGCTCATAAAT
TCCTCTGTGTCGTACCTCTCCCACGTTCAGTACGAATGTGATGATGGTTATGAGATGGTG
GGTCGCTCGAGACTCGTCTGTGACATCGACGAACGTTGGAACGGTCCGCCGCCCAGATGT
GATGTGGTCCAATGCGAACAGCCACCTCAGGTTTTAAACAGCCGCGTGTCCATTACGAAC
AACGTGTCTGTGTTCGGAGCCTTCGCTGAATACACATGCGCTAAGGGCTACAAAATCCAA
GGAGCGCGTAGAATGAAGTGTCTAGCCACAGGAGTTTGGGACAAACCGGCGCCACAATGT
CTTCCCGAGGAGCGTCCCACAACTACTACTACAACAACTACGACTACAACAACAACAACT
ACAACCGAGATCCCTACAACAATCACCGTCCCTACAACACAGCTGCCAACCAGCCCTCGC
TTGATATTACCGACGAGGAGACTCCCGAGGCCGTCCTCGCCTAATCCATTCGTGACACCT
GAACCTGCTAAAACCAGGCCGAGGCCAAAGTTCACGACGACCGAAAGAGCAACAACGAAA
TCGTATGACAAACCCCCGCTAAGGAAAGTCACTGTTTCCGACTCCCAGGAGAGTCAATCG
AGTCAAGTGCCTCACATCATCGTGGCCAGTCATCCGCGAGAGAACCAGGTCTTCGGAAAC
GGAAATAATATAAGGGCGGAACAGACTCCGCGTGTGAACATTCCTCAGCCGGTGGACGGT
GAGAGAAGAGAGACCCTCGGAGCTCGCCTCAACATCGGCGCGGTGGTCGCCTTAGGAGCC
TTCGGCGCCCTCGTCTTCCTCATAGCCATCATTACCACCATCGTCATATTAGTTAGGAGG
AAACATAACGACGGGAAGCGCTACAGGCATCACGTGTCGCCGGACTGCAATACAGTGGCG
TCGCTGGACTCGTCGTCGTCGGAGTCGAGGAGCGGGTTGAACAGGTACTATCGGCAGGCG
TGGGAGGAGCTCCACGAGGCCACCGGCGCCAAGCACGGCCAGAGACGACACGAGCGAGAA
GCCCCCAAAGACGGCTCCGAGCTGGTCGTGTCCGACGTGTACCCGGCGGAGCACAGAGAC
AAACGACGACACCACCACCACCACCACCGCGAGCGACACCCCGACTGGCAACCATCACAC
CGTCCCCACCACAAGCACAAACCTAGATATTAA
Protein sequence:
MDVLCVCVLLALAEGLAASTCGFPGAPAHCNVAFSDEGLTEGTVATYACERGFELLGPSR
RLCDKNGKWTPDGIPFCVLNVAAGKAPMQISTEDGGVPQRALDGSTSAAFNAETCTLTKT
ERVPWWYVNLLEPYMVQLVRLDFGKPCCGVNKPAVVVVRVGNNRPDLGTNPICNRFTGFL
EEGQPLFLPCNPPMPGAFVSVHLEGSSPSQLSICEAFVYTDQALPIERCPQFRDQPPGST
ATYNGKCYIFYDRQPADFRDSLGFCRSRGGTLVDESNPALQGFISWELWRRHRSDSSSQY
WMGAVRDPQDPGNWKWVNGKDVTVSFWNAPGGSEGCARFDGSKGWLWADTDCQSKLNYIC
QHQPKACGRPEQPPNSTMTTESFDVGATVEYACDEGHLLVGPTVRTCMDTGFYDEFPPVC
KRIECGFPADISHGGYQLINSSVSYLSHVQYECDDGYEMVGRSRLVCDIDERWNGPPPRC
DVVQCEQPPQVLNSRVSITNNVSVFGAFAEYTCAKGYKIQGARRMKCLATGVWDKPAPQC
LPEERPTTTTTTTTTTTTTTTTEIPTTITVPTTQLPTSPRLILPTRRLPRPSSPNPFVTP
EPAKTRPRPKFTTTERATTKSYDKPPLRKVTVSDSQESQSSQVPHIIVASHPRENQVFGN
GNNIRAEQTPRVNIPQPVDGERRETLGARLNIGAVVALGAFGALVFLIAIITTIVILVRR
KHNDGKRYRHHVSPDCNTVASLDSSSSESRSGLNRYYRQAWEELHEATGAKHGQRRHERE
APKDGSELVVSDVYPAEHRDKRRHHHHHHRERHPDWQPSHRPHHKHKPRY