| New model in OGS2.0 | DPOGS203367 |
|---|---|
| Genomic Position | scaffold6:+ 42662-54360 |
| See gene structure | |
| CDS Length | 2853 |
| Paired RNAseq reads | 5144 |
| Single RNAseq reads | 12013 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003892 (0.0) |
| Best Drosophila hit | beta'-coatomer protein (0.0) |
| Best Human hit | coatomer subunit beta' (0.0) |
| Best NR hit (blastp) | coatomer protein complex subunit beta 2 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | coatomer protein complex subunit beta 2 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0030903 notochord development GO:0005198 structural molecule activity GO:0016192 vesicle-mediated transport GO:0005515 protein binding GO:0030117 membrane coat GO:0006886 intracellular protein transport |
| InterPro families | IPR020472 G-protein beta WD-40 repeat IPR011046 WD40 repeat-like-containing domain IPR011048 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR016453 Coatomer, beta' subunit IPR001680 WD40 repeat IPR006692 Coatomer, WD associated region IPR019781 WD40 repeat, subgroup |
| Orthology group | MCL14280 |
Nucleotide sequence:
ATGTTACAAAAGCCGTTAAGATTGGAAATCAAGAGGAAGCTGACAGCGCGATCTGATCGC
GTCAAGTGCGTCGACCAGCACCCAACAGAACCGTGGCTGCTTTGTTCGCTGTACAGCGGC
GACGTCAATATATGGAACTATGAAACACATACACAGATCAAAAGATTCGAGGTGTGCGAC
TTACCAGTGAGGGCTGCTAAATTCGTGATGCGGAAGAACTGGGTCGTGACAGGATCTGAC
GATATGCAGATCAGAGTGTTTAATTACAATACTCTAGAAAGGGTGCACAACTTTGAGGCT
CACTCGGACTACATAAGATGCATCGTCATACATCCCACACAGCCTTACATACTGACAAGC
AGCGACGATCTCCTCATCAAGCTGTGGAACTGGGACCGTAACTGGGCTTGCCAGCAAGTG
TTCGAGGGCCACACCCATTACGTGATGCAAATTGTTATCAACCCTAAAGATAACAATACA
TTTGCCAGCGCAAGTCTCGATACCACTGTTAAGGTTTGGCAGCTCGGTTCATCAATCTCA
AACTTCACATTGGAAGGTCACGAGAAAGGTGTCAACTGTGTGGATTACTACCACGGTGGT
GAAAAGCCCTACCTCATCAGCGGTGCCGATGACCGTCTTGTCAAGATATGGGATTACCAG
AACAAGACATGTGTTCAGACGCTAGAAAGTCACGCCCAGAATGTCACAGCGGTTTCCTTC
CACCCGGAACTTCCCATCCTGCTTACGGGCTCCGAGGACGGCACCGTGAGGATCTGGCAC
GCCGGGACATACAGACTGGAAGCGGCCCTCAACTACGGCTTTGAAAGAGTATGGACTTTA
TCATCACTCCACAGATCCAACAATGTGGCTATCGGATATGACGAAGGTACCATAATGATC
AAAGTTGGAAGAGAAGAGCCCGCTATATCCATGGATGTGAACGGTGGGAAAATAATTTGG
GCCAAGCATTCTGATATGCAGCAAGTTAATTTGAAAGCTCTACCCGAAGGTACAGATATA
AAAGATGGCGAACGGGTCCCAGTGGTTGCTAAAGATATGGGTTCCTGTGAGATATATCCC
CAGACGATAGCCCACAATCCAAACGGACGTTTCGTGGTTGTGTGCGGTGATGGGGAATAC
ATAATATACACAGCCATGGCCTTGAGGAATAAGGCCTTCGGAACAGCCCAGGAGTTTGTG
TGGGCTTTGGATAGCTCGGAGTACGCTACACTGGAGAATTCTAGCACAGTGAAAGTCTTT
AAGAACTTCAAGGAGAGGAAGAGCTTTAAACCTGAATATGGCGCTGAAGGTATCTTCGGT
GGATTCATGCTGGGCGTTAAGTCTATCAGTGGCATGGCCTTCTCGTTCTACGACTGGGAA
CAATTGGAGCTCATTAGACGTATCGAGATTCAGCCTCGTCATGTTTTCTGGTCTGAGAGC
GGAAGCCTAGTGTGTCTGGCCAGCGAGGAGGCCTACTACGTGCTGAAGTACAACGCTTCT
GTCGTAGCTAAATCAAGAGAAAATAATACTAACGTAACCGAGGACGGCATCGAGGATGCT
TTCGAGGTTGTGGGCGAAGTAAATGAGTCGGTGAAGACGGGCTTGTGGGTAGGCGACTGC
TTCATATACACCAACTCGTTGAACAGAATCAACTATTACGTCGGCGGTGAGATTGTGACC
ATAGCGCACTTGGACCACACGATGTATATCCTGGGATACGTCGCTAAAGAAAACAGGCTG
TACCTCAACGACAAGGAGTTGAACATAGTGTCGTATTCCCTCCTGCTGCCGGTTCTGGAG
TATCAGACGGCGGTGATGAGAGGTGACTTCGAAACAGCTGATCGCGTCCTGCCGACCATA
CCTCACGATCATCGCACCAGGGTCGCACATTTTCTCGAGAAACAGGGCTTCAAACAACAA
GCTCTGGCTGTGTCAACGGAGCCCGAACACCAGTTCGAGCTGGCCCTGTCGCTGGGCGAG
CTGAAGAAGGCCAGCCAGTTGGCAGAGGAGTCAGATAAGGCCGAGGGCCGCGAGGACAAC
CAGCCCTCGAGGCCTTCAGCTGCCAGGTGGTCCAGATTGGGAGCAGCAGCTGCAGCAGCT
GCAGACACTGATCTCACCAAGTTCTGCTACCAGAAGGCCCGCGACTACAGCGCCCTGCTA
CTATTCTCCGTCAGCACTGGCGATCGTGAGTTGCTGGAAGAGGTGGCTCATATGTCCGAT
CTGGCCGGTGAAGATAACATAGCCTTCACATCCTATCTTACTCTGAATGACCTGGACTCT
TGTCTGGCGCTGCTTCTCAAACGAAACAAACTACCAGAGGCTGCGTTCTTCTGCAGGTCA
TACTATCCTTCAATGATGAGCGATGTCCTCAAACGTTGGAGGGATTCCGTCTCTATGACC
AATCCCAAGTGCGGCCAGGCCTTGGCCGATCCCAACAAATACGACAACCTGTTCCCGGAA
TACATGGATACCCTGGCGATGGAGTTCTACCAGAAGCACTTTGGTTATCCGTACTACAAT
CAGTTGGAGCATATCAAAGAGAACACTGATTTATGCAATGTTGACCGAGACATGGCTCAC
GAAAGGCTGGTCGCTATCCACATGGGCGCCTGGGACCCTAGGGTCATAACCCCACCATCC
GGTGCTTCAGGTCTCTCCAGTCTACAGGACAGTCCGAGACGAGATCCCAGAAATCCAGAT
AGTTCAGATGAAGCTTCCTATTCTGATGAAAAGATCAGACGTAGAGACTCCATGGACATC
CTCGAAGAGATTGAACGTGAGATAGACAACATTGTGCTGGACAACAACGAAGAGGATCTG
GATTCGTCAGACGAGACCATGTATCTTGAATAA
Protein sequence:
MLQKPLRLEIKRKLTARSDRVKCVDQHPTEPWLLCSLYSGDVNIWNYETHTQIKRFEVCD
LPVRAAKFVMRKNWVVTGSDDMQIRVFNYNTLERVHNFEAHSDYIRCIVIHPTQPYILTS
SDDLLIKLWNWDRNWACQQVFEGHTHYVMQIVINPKDNNTFASASLDTTVKVWQLGSSIS
NFTLEGHEKGVNCVDYYHGGEKPYLISGADDRLVKIWDYQNKTCVQTLESHAQNVTAVSF
HPELPILLTGSEDGTVRIWHAGTYRLEAALNYGFERVWTLSSLHRSNNVAIGYDEGTIMI
KVGREEPAISMDVNGGKIIWAKHSDMQQVNLKALPEGTDIKDGERVPVVAKDMGSCEIYP
QTIAHNPNGRFVVVCGDGEYIIYTAMALRNKAFGTAQEFVWALDSSEYATLENSSTVKVF
KNFKERKSFKPEYGAEGIFGGFMLGVKSISGMAFSFYDWEQLELIRRIEIQPRHVFWSES
GSLVCLASEEAYYVLKYNASVVAKSRENNTNVTEDGIEDAFEVVGEVNESVKTGLWVGDC
FIYTNSLNRINYYVGGEIVTIAHLDHTMYILGYVAKENRLYLNDKELNIVSYSLLLPVLE
YQTAVMRGDFETADRVLPTIPHDHRTRVAHFLEKQGFKQQALAVSTEPEHQFELALSLGE
LKKASQLAEESDKAEGREDNQPSRPSAARWSRLGAAAAAAADTDLTKFCYQKARDYSALL
LFSVSTGDRELLEEVAHMSDLAGEDNIAFTSYLTLNDLDSCLALLLKRNKLPEAAFFCRS
YYPSMMSDVLKRWRDSVSMTNPKCGQALADPNKYDNLFPEYMDTLAMEFYQKHFGYPYYN
QLEHIKENTDLCNVDRDMAHERLVAIHMGAWDPRVITPPSGASGLSSLQDSPRRDPRNPD
SSDEASYSDEKIRRRDSMDILEEIEREIDNIVLDNNEEDLDSSDETMYLE