| New model in OGS2.0 | DPOGS203389 |
|---|---|
| Genomic Position | scaffold6:+ 490516-492126 |
| See gene structure | |
| CDS Length | 1125 |
| Paired RNAseq reads | 91 |
| Single RNAseq reads | 217 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002082 (3e-108) |
| Best Drosophila hit | actin 87E, isoform B (2e-87) |
| Best Human hit | actin, cytoplasmic 1 (6e-87) |
| Best NR hit (blastp) | actin [Ciona intestinalis] (4e-98) |
| Best NR hit (blastx) | skeletal muscle actin 8 [Homarus americanus] (1e-86) |
| GeneOntology terms | GO:0005200 structural constituent of cytoskeleton GO:0005856 cytoskeleton GO:0007010 cytoskeleton organization GO:0005634 nucleus GO:0005618 cell wall |
| InterPro families | IPR004000 Actin-like |
| Orthology group | MCL39634 |
Nucleotide sequence:
ATGTCCGCTGATAGGATCGCGGTCGTTTTTGATTCTGGGTCTCAATCGACGAAAGCCGGT
TTCGCTGGAGAATCTTCGCCAAGATCTGTCATTAAAACCCTGGTAGGACGATTTCGCCAT
GAAGGTCTATTGGACGGACTTCCAGATATATTTTTCGGGAATGAAGCTGTCAAGAAGAGA
GGGTTTTGTGTATCGACGTGGCCAGTAAAAGATGGAATGATAGATGATTGGAATGAAGTG
GAAAAATTTTGGCATCATATCTTTTACAAAGAACTGCATGTTGCTCCCGAGGAGGCTCAA
CTTTTAATGTCAATTCATCCACTTACGCCACATAAAGACAAGGAAAAAATGGCCGAGATA
CTTTTTGAGAGTCTCTCTATCCACGACTTATACTTGGCGATATCATCGGCGCTGGCATTA
CATGCGAATGGGAGGACATCAGGACTGGTCTGGGAAAATGGGCATTCGTGTTCTTATGTA
TCACCAGTTTTTGAGGGATTCCCCCTTAAACATGCCACTATAGAGTCAGAAATTAATGGG
AGTTCTCTGACAAAAAGACTCCAAAAGCTGTTAAACGAGATCGGCTATTCTTTCACCACA
AGTGTGGAAATAGACATACTGGAAGATATAAAGGCAAAGCTATGTTATGTGGCCATGGAC
TATGAGAATGAAGTACAGACTGTCAATCGTTTAAAAGATAGCACCCACTATGAGTTGCCT
GATGGACAGCATGTTTTGCTTTGCGAGGAAAGGTTCAAGTGTCCGGAAATGCTATTTCAA
CCAAAAACGTGCGGGATGAATTCCTTTAACATAGTGGATAATATTTGTTCTAGCATATCC
AAATGCGATTTGGAATATAAAACTTTATTTTACGATAACATAGTACTTTCTGGCGGCTCA
AGCTTGTTCAGAGGGCTCTCCGAGCGTTTGAGTGTTGAACTATCCAGGCGAGTATCAGAT
ATGCCTGGCATAAAAGCAAATGTTAGTTCAATCCCATCCAGACATTATTCGTCATGGTTA
GGTGGATCTATCTTGGCGTCGCTGAAATCCTTACACGGGTTTTGGATGACAAAACAGGAA
TATGACGACAACGGACCCGAAAGGGTACATTATAAATTTTTTTAA
Protein sequence:
MSADRIAVVFDSGSQSTKAGFAGESSPRSVIKTLVGRFRHEGLLDGLPDIFFGNEAVKKR
GFCVSTWPVKDGMIDDWNEVEKFWHHIFYKELHVAPEEAQLLMSIHPLTPHKDKEKMAEI
LFESLSIHDLYLAISSALALHANGRTSGLVWENGHSCSYVSPVFEGFPLKHATIESEING
SSLTKRLQKLLNEIGYSFTTSVEIDILEDIKAKLCYVAMDYENEVQTVNRLKDSTHYELP
DGQHVLLCEERFKCPEMLFQPKTCGMNSFNIVDNICSSISKCDLEYKTLFYDNIVLSGGS
SLFRGLSERLSVELSRRVSDMPGIKANVSSIPSRHYSSWLGGSILASLKSLHGFWMTKQE
YDDNGPERVHYKFF