New model in OGS2.0 | DPOGS203406  |
---|---|
Genomic Position | scaffold6:+ 1129294-1132801 |
See gene structure | |
CDS Length | 1947 |
Paired RNAseq reads   | 88 |
Single RNAseq reads   | 226 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010528 (2e-75) |
Best Drosophila hit   | bloated tubules, isoform C (8e-26) |
Best Human hit | ND |
Best NR hit (blastp)   | bloated tubules [Tribolium castaneum] (4e-43) |
Best NR hit (blastx)   | bloated tubules [Tribolium castaneum] (5e-41) |
GeneOntology terms    | GO:0005326 neurotransmitter transporter activity GO:0002009 morphogenesis of an epithelium GO:0016021 integral to membrane GO:0005328 neurotransmitter:sodium symporter activity GO:0006836 neurotransmitter transport GO:0005887 integral to plasma membrane |
InterPro families   | IPR000175 Sodium:neurotransmitter symporter |
Orthology group | MCL17681 |
Nucleotide sequence:
ATGGGATATTTTAATTATAAGAACTGGCTTAGCTGGCGTTTGCTTCGAACTCACTTGTAC
ACTTTGGCTGTGAGTGCAGGCTTTAGCAGTAGTTGGCGGACTCCAAGGGAGGCGTTTCTG
TATGGAGGTCTTACTTTTTCGTTAGCGCTAACAGTAGCAGCGGTGCTGATTGCACTGCCG
ACGGTGTTGCTGCAACTTGCCGTGGGCCAGCTTAGTCAGCAAGATGCTGCGGGAGTGTGG
AGAGCGGTTCCATTTTTTAAAGGCGTTGGTTTTTTACGTTTGTTGATATCTTTTGTGGGC
TCCATTTACACTGTGATTTATGTTGGCATGTGTGCTATTAATTTTTTCTACACCTTAAAC
AGTACATTTGCCGACTGCATGGAGTTAATAGCGATGGATGATGTTTTACAGGTTGAGGGC
GATATTTATGGAACTGCGTGTTCAAACGGAACCTTTTTGGCTCCTGTTAATGAGCAACCG
GAGTATTACTTAGCTCTGGCATTAATTATTATTGTGCTTTGGACAGTGTTTCCTTTTATT
TTTTACAATCCAGTAAAATTTATGAAGAGAATATTCTACATTACTGGACCTATAGTTTAT
TTACTTGGAGTTATTATCGTATCTTTTATCGGCACGACCGAGGGTTTATCGTCCTTTACC
GAAAGCGATGATTGGATTAACTTTTTGAGGCCGTACATTTGGTATAGTGCGTTAACTCAG
GCTTTGCTTTCCACACAGACAGCTGGAGGCTATCTTATATCGTCCGGCGATTCTCTATAC
TCCGATACCGACGTTCAGTATACCTCATTTGTTTTTGTCGGCTTCAATATCGTTTCATGT
TGGACTGGAACATTGTTCTGGTTCGCTGTAGGCGGAAGTGATGCCAAAGTCACCAGCAGC
GCGGCCGTGCTCGTACAAATACACAAGGTTACCATAGAACGAAATCTAAGCAACGCGTGG
CCGATCTTGTTATATTTACTATTATTTATATCGGGCATTATAACAATGATTACATTCCTG
TATCCTTTGTATGATCGTTTCCGCCGCGTGGGCGGGTACAAATGGCGATATTTATCTGTG
GGCAGTTCGATTGTGGGCGTTGGAGCCGCTATCGCCGTGCTAGCTTTCGGTCACTCACCG
CTCACCCTGCTTGAGGACGTCGTTATGCCCCTTATGATCAGCTTCGCCACCTTGGTTGAG
ATATCCGCTTTTATATTTATTTATGGATGGAAAGTGTTGGTTGAAGATATCGAATTTCTC
ATTGGATACAATCTTCGCAAGTACTGGGTGTTAGGGTGGTTCGTTGTCATTGGAGTACTT
GCACCGTTCACGGCATGGTGGACGGCGGACTGGTTTCTTGACACACCCAACTGGATAGAG
CCTCCTTGGGAAGCGACTACCATAGTTATAACTGCGGGCTTCTCTGTTGTATTATTTTTA
ATTTGTGCTGCTATATCCGTTTCAAAACAAGTCCAATATGATTTCATGGGGAAGTTAAAA
TCGTCATTTACACCTTCGAGGCACTGGGGCCCGCGGGACCCTATAACTCACTACTATTGG
CTGGCGCGTCGTGAGGGGAGCCGCGACGTCCCGCAACCGGTGCTTCGCCGTCCGGTCTTA
GGAGAGTTTTCAGGAACATCAAGCTTGTCGATCATTATTAGCCCACACGAAGATTTTGCT
CACGTAAATCAACGGCGATCGAAATCTGACGATCAGGTCGTTGTGAACAGAAAACAATAT
ACCGCGGAATTGAATCAAATTCAAAGCGTCTTCCAAAGACGTTCTAAATCCTTAGATTGG
AATTTCTCGTCTAAAAATAATATTCAAAATAACGTTTCCATAAAGAAGAGTCATGATTTA
GAGAGAAAGACACATCCAAATGAACCGATAGTTATTATAAGGGAGATGAATAATAATACT
CTTTCATTAGAATCTTTAGACATTTAA
Protein sequence:
MGYFNYKNWLSWRLLRTHLYTLAVSAGFSSSWRTPREAFLYGGLTFSLALTVAAVLIALP
TVLLQLAVGQLSQQDAAGVWRAVPFFKGVGFLRLLISFVGSIYTVIYVGMCAINFFYTLN
STFADCMELIAMDDVLQVEGDIYGTACSNGTFLAPVNEQPEYYLALALIIIVLWTVFPFI
FYNPVKFMKRIFYITGPIVYLLGVIIVSFIGTTEGLSSFTESDDWINFLRPYIWYSALTQ
ALLSTQTAGGYLISSGDSLYSDTDVQYTSFVFVGFNIVSCWTGTLFWFAVGGSDAKVTSS
AAVLVQIHKVTIERNLSNAWPILLYLLLFISGIITMITFLYPLYDRFRRVGGYKWRYLSV
GSSIVGVGAAIAVLAFGHSPLTLLEDVVMPLMISFATLVEISAFIFIYGWKVLVEDIEFL
IGYNLRKYWVLGWFVVIGVLAPFTAWWTADWFLDTPNWIEPPWEATTIVITAGFSVVLFL
ICAAISVSKQVQYDFMGKLKSSFTPSRHWGPRDPITHYYWLARREGSRDVPQPVLRRPVL
GEFSGTSSLSIIISPHEDFAHVNQRRSKSDDQVVVNRKQYTAELNQIQSVFQRRSKSLDW
NFSSKNNIQNNVSIKKSHDLERKTHPNEPIVIIREMNNNTLSLESLDI