New model in OGS2.0 | DPOGS201649  |
---|---|
Genomic Position | scaffold737:+ 6223-22065 |
See gene structure | |
CDS Length | 1374 |
Paired RNAseq reads   | 626 |
Single RNAseq reads   | 1565 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008198 (6e-93) |
Best Drosophila hit   | ocelliless (1e-32) |
Best Human hit | homeobox protein OTX2 isoform b (3e-30) |
Best NR hit (blastp)   | orthodenticle [Bombyx mori] (3e-174) |
Best NR hit (blastx)   | orthodenticle [Bombyx mori] (2e-100) |
GeneOntology terms    | GO:0001700 embryonic development via the syncytial blastoderm GO:0035284 brain segmentation GO:0006355 regulation of transcription, DNA-dependent GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0007399 nervous system development GO:0008056 ocellus development GO:0048816 ocellus morphogenesis GO:0007628 adult walking behavior GO:0007355 anterior region determination GO:0042051 compound eye photoreceptor development GO:0042052 rhabdomere development GO:0043565 sequence-specific DNA binding GO:0007420 brain development GO:0007389 pattern specification process GO:0035288 anterior head segmentation |
InterPro families    | IPR017970 Homeobox, conserved site IPR009057 Homeodomain-like IPR012287 Homeodomain-related IPR001356 Homeobox |
Orthology group | MCL40240 |
Nucleotide sequence:
ATGGCGCTGCTGAACTCCTCGACCGCCAACGGTCCAAATCCTCAGAGTCATTCGACTCCA
CTACATCATTACTTCCACTATCTGAAGCAGCCGTCACCGTTATCACAGAACCCTTATGCC
CCGGGACCTCACATGGGCATGGGCCCAGGACTCGGGGGCCTGGGACCCTTCGGACTGACC
CACCACGGTCTCGAGGCTGTCGGATTCCCTCAAGGTGTGAATCCTCGTAAGCAGCGGAGG
GAAAGGACGACCTTCACTCGCGCTCAGCTGGATGTTCTGGAAGCTCTGTTCGGGAAGACG
AGGTACCCGGACATCTTCATGAGGGAGGAGGTCGCGCTCAAGATAAACCTGCCAGAGTCC
AGGGTTCAGGTCTGGTTTAAGAACCGTCGCGCCAAATGTAGACAACAGCTCCAACAACAG
ACGAACTCGCAGATCAGCAGCAAATCTTCTTCATCATCAAAGACGATATCCGCAGCCAGC
TCAATGAAGAGCTCCTCCAACAAAATCTCCTCAACGAAACCCTTAACCTCCTCCAACTCC
TTGACCTCCACGCAGAACAGCATAACCACATCTTCCCCCAACCTCCCCACCCCCACCACA
TCCGTCAGCCCCCCCATCAACGTCATATGCAAGAAAGAATCCGCGCCCAGCTACGACTCG
TCCCCGCTAAACAAAAACCTCACATCCATCAACCATTACACCAACGATCTCCGGACCAAA
GATTCCTCTCCATCCGAGGTGAACGTCCACAATTACGGAGTCACGCCCAAACAAGAGCTA
TACAACAGTCCCAAAAGACTTGAATACAATAAAGTGGACTATACAGAGAAATTCGGTGGG
AATCTGGTCAAAGAGCAGTACAACTCGCGCCTGACGGGCAACCTCACACCGCTGGGGTCC
AATTCCTCTATAATGACGACCCCATCACCCCCAATCACCCCCCAGAGCATCAACGGGCCG
GGGAACGTTTATCACCCCGACAGCTACAACAGCTTCCACTGGCCCGGCAGCTCGGACTAC
ATCCGCAGTTACTCCGGCACACATCACCAGGGATACGGACAGAGTTACAACTCGCCTTAC
TATCCCTCACAGATGGAATACTTCAACGGGTCATCAGTGAACCAGGCTCACGGGAGTCAC
CACGGTCACAACCTGTCAGCGAACGGCAACCAGCTGTACAACCAGGTGTCGTTCGGCAAC
CCGTCCCCGCCGGCCGCCTGGAGCTCACACAACATACTCTCGTCGGGAGCCGAGTCCCCC
GACAACCAAGCCCAGAACCACCTCAGCATGATCCAAGCATCACAAATAACGAACTTCCCC
AACACCAGCAATAGTTACTTCGCGCCGGAGAAATACGGCATCAATATGGTCTAG
Protein sequence:
MALLNSSTANGPNPQSHSTPLHHYFHYLKQPSPLSQNPYAPGPHMGMGPGLGGLGPFGLT
HHGLEAVGFPQGVNPRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPES
RVQVWFKNRRAKCRQQLQQQTNSQISSKSSSSSKTISAASSMKSSSNKISSTKPLTSSNS
LTSTQNSITTSSPNLPTPTTSVSPPINVICKKESAPSYDSSPLNKNLTSINHYTNDLRTK
DSSPSEVNVHNYGVTPKQELYNSPKRLEYNKVDYTEKFGGNLVKEQYNSRLTGNLTPLGS
NSSIMTTPSPPITPQSINGPGNVYHPDSYNSFHWPGSSDYIRSYSGTHHQGYGQSYNSPY
YPSQMEYFNGSSVNQAHGSHHGHNLSANGNQLYNQVSFGNPSPPAAWSSHNILSSGAESP
DNQAQNHLSMIQASQITNFPNTSNSYFAPEKYGINMV