New model in OGS2.0 | DPOGS204137  |
---|---|
Genomic Position | scaffold1311:- 1992-3714 |
See gene structure | |
CDS Length | 345 |
Paired RNAseq reads   | 87 |
Single RNAseq reads   | 706 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013623 (7e-42) |
Best Drosophila hit   | elongin B (5e-38) |
Best Human hit | transcription elongation factor B polypeptide 2 isoform b (2e-28) |
Best NR hit (blastp)   | PREDICTED: similar to Elongin B CG4204-PA [Apis mellifera] (6e-43) |
Best NR hit (blastx)   | PREDICTED: similar to Elongin B CG4204-PA [Apis mellifera] (4e-42) |
GeneOntology terms    | GO:0005515 protein binding GO:0005634 nucleus GO:0005654 nucleoplasm GO:0005667 transcription factor complex GO:0005829 cytosol GO:0016251 general RNA polymerase II transcription factor activity GO:0030891 VCB complex GO:0045449 regulation of transcription GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0004842 ubiquitin-protein ligase activity |
InterPro families    | IPR019955 Ubiquitin supergroup IPR000626 Ubiquitin |
Orthology group | MCL14431 |
Nucleotide sequence:
ATGATTAGGCGAAAAAAACTTACCATCTTTACGGATGCCAAAGATACAACAACTGTTTTG
GAATTGAAGAAAATGATAGAGGGCATCTTGAAAGTAGCTCCTCCGAGTCAAATGCTTTTT
AACAAGGATAGCCAGCTCATGGACGATGACAAAACTCTGGCAGAGTACGGTCTTACTTCA
GCCACTGCCAAAGCTCAATGCCCGGCACCAATTGGACTTGCTTTAAGAAAAGAGAATGGT
GAATTTGAGGCTCTAGAACTGACTCCGTACTCGTCTCCCCCGGACCTGCCTGATGTTATG
AAATCCCAGGAGACAAATGGACAGGAACAGATGGATCAACACTAA
Protein sequence:
MIRRKKLTIFTDAKDTTTVLELKKMIEGILKVAPPSQMLFNKDSQLMDDDKTLAEYGLTS
ATAKAQCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQEQMDQH