New model in OGS2.0 | DPOGS212036  |
---|---|
Genomic Position | scaffold858:- 32504-34926 |
See gene structure | |
CDS Length | 831 |
Paired RNAseq reads   | 305 |
Single RNAseq reads   | 942 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010004 (2e-98) |
Best Drosophila hit   | syntaxin 13 (3e-29) |
Best Human hit | t-SNARE domain-containing protein 1 (2e-16) |
Best NR hit (blastp)   | syntaxin [Bombyx mori] (4e-93) |
Best NR hit (blastx)   | syntaxin [Bombyx mori] (2e-85) |
GeneOntology terms    | GO:0016081 synaptic vesicle docking involved in exocytosis GO:0005886 plasma membrane GO:0005484 SNAP receptor activity GO:0016192 vesicle-mediated transport GO:0007269 neurotransmitter secretion GO:0007143 female meiosis GO:0007067 mitosis GO:0007140 male meiosis GO:0007110 cytokinesis after meiosis I GO:0000281 cytokinesis after mitosis GO:0006886 intracellular protein transport |
InterPro families    | IPR010989 t-SNARE IPR006012 Syntaxin/epimorphin, conserved site IPR006011 Syntaxin, N-terminal IPR000727 Target SNARE coiled-coil domain |
Orthology group | MCL15290 |
Nucleotide sequence:
ATGACAGAACGAGAACCTATAAGTGGGTCGAGCCGTGATTATGGTTCTACGGCAGCACCA
CTCACCGTCGCCTTTGCTGACTTTAGCCCCACAGAACTTTACAACCTCAGCGAAGGAATA
GCAGACAATGTGAACACTATTAACAATGGACTACAGGCTCTACAAAAGTTGATGAAACAA
ATCGGTGGACCCAATGATAGTGTGCAGCTAAGAGATAAAATTCATGACACACAACAAAAT
GTAAATGGCTCTATATCAGCTACGGCTCGAGATATACAAAGACTAGGTGTGGTTGTCCGT
CGAGGAGATAAACCCCAGAAGCTGCAAGTGGAACGATTGACACAAGTGTTCAGAGAGACA
CTGGCAAGATACTCTTCTATGCAAAAACAATTATCAGAAAAAATGGCTGAACATATGCCG
ACACAGGCAAGGCAAAGGAATGATCCGGATGCTTTAGAACGACAAGCTATAGCTGATGAC
GAAGAATCAGCGCTTCTAGCAAATCAGCAAGCACAGGCTCGTCTAATACAATTTGAAACT
AGTATGTTATTAGAAAAGGAAGCATATATGAATAAAATCGAGGCTGACGTGTTAGATGTG
AACCAAATTATGCAAGATTTGGCCGAAATGGTCAACGCTCAAGGACAGAAAGTTGATACG
GTAGAAAGTCATATAGAAGCGGCTAGTGCCGGCGTCGAAGCGGGAGTTGATGAATTAGCC
AAGGCGGCCGAATATCAACGGAGATACAGAAGAAAAATGTTCTTTTTCATATTAATCGGT
GTGATTCTAGCAATTATTTTCATTATATGGGTAGTGAAAGCTTTCAAATAA
Protein sequence:
MTEREPISGSSRDYGSTAAPLTVAFADFSPTELYNLSEGIADNVNTINNGLQALQKLMKQ
IGGPNDSVQLRDKIHDTQQNVNGSISATARDIQRLGVVVRRGDKPQKLQVERLTQVFRET
LARYSSMQKQLSEKMAEHMPTQARQRNDPDALERQAIADDEESALLANQQAQARLIQFET
SMLLEKEAYMNKIEADVLDVNQIMQDLAEMVNAQGQKVDTVESHIEAASAGVEAGVDELA
KAAEYQRRYRRKMFFFILIGVILAIIFIIWVVKAFK