| New model in OGS2.0 | DPOGS212040 |
|---|---|
| Genomic Position | scaffold858:+ 20703-29554 |
| See gene structure | |
| CDS Length | 1686 |
| Paired RNAseq reads | 796 |
| Single RNAseq reads | 1897 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010089 (0.0) |
| Best Drosophila hit | Tfb1, isoform A (1e-141) |
| Best Human hit | general transcription factor IIH subunit 1 (9e-102) |
| Best NR hit (blastp) | GD11042 [Drosophila simulans] (2e-159) |
| Best NR hit (blastx) | GE13578 [Drosophila yakuba] (5e-143) |
| GeneOntology terms | GO:0016251 general RNA polymerase II transcription factor activity GO:0005675 holo TFIIH complex GO:0006367 transcription initiation from RNA polymerase II promoter |
| InterPro families | IPR005607 BSD IPR011993 Pleckstrin homology-type IPR013876 TFIIH p62 subunit, N-terminal |
| Orthology group | MCL14279 |
Nucleotide sequence:
ATGACCACATCGTCGGAGGACGTTCTTTTGAGTGTAGGACATGTAAGGTATAAAAAGGGC
GATGGCACTTTGTATGTGATGAACCAAAGATTGGCTTGGATGCTTGAGAACAAGGACACT
GTTGCTGTCTCTCACAAGTATGCAGATATAAAAACTCAAAAAATCTCACCAGCTGGAAAA
CCAAAAGTTCAACTACAAGTGGTGTTACATGATGGGGCATGTTCCACATTTCATTTTGTC
AATCCGGCCGGGGCAGAGGCTCAGGCTAAAGACAGGGACCAAGTTAAAATGTTATTACAG
AATCTATTACCCAAGTTTAAGAGACAGATAGACGGAGAGTTGGAGATGAAATCTAAGCTA
CTGTCGTTACATCCCACATTAAAGCATTTATATGAAGATTTAGTTATATCAAAAGTTATA
AATAGTGAAGAGTATTGGAATACGCCGACATTGAAACATTACACAGAATCTACTAACATG
AAACAAGAGGCCGGCGTGTCGGGTGCGTTTCTAGCCGATATACAGCCGCAGACTGATGGA
TGCAATGGACTTAAGTATAACCTGACGCAGGACATTATAGATGCCATATTCAAAACATAT
CCGGCGGTTAGGAAGAAACATGTGGATTATGTGCCAAATAAGATGACAGAGGCTGAGTTT
TGGACAAAATTCTTTCAATCCCATTACTTTCATAGAGATCGTATAATGTCGTCATCGAGT
AAGGACTTATTTGGGGAGTGCGCTAAACTTGATGACCAAGCGATCGCCTCCGCTATGAAA
CACACAACCTTGGACTTGACTGTGGATCTACCCTCATTCAAAGAACCAATCCCACTCTTA
CCCGACGATGAAACACACGAAAAGGAAAAAGATGGTACATCGATACACAGGAACATGATA
AAAAGATTCAACCAACACTCCATAATGGTGCTAAAAGCTAGTCATAAAAATTCCAATAGC
AGTAGTAGTAAAACAAATAAAGTCGAGAATGGTATGAAAGAAACGAACGGCGTCGAAAAA
AGGCCGAGTGCAGACAAAGATGTGACGGAGCCGGTTGATAAGAAACGTAGGATAATGGAG
AAGATACATTACGAGGACCTGGATAATGTGGATAGCAATGAAGATACTCAGGAGTTGAAA
CTGTCAAAGGTAGAACGATATCTGTTGGGTCCAGCGTCTCAAGTGGGTCACACAGGAACG
AGTTCCAGTAATCCACCACCACTGTCCGCCCTGGCATCTGTCTGTCAGGCGTGGAGTAGT
GGTCAACAGTGTAGTCGCCCTGTCCGCGTGAGTGCTGCGGCCGCTGTCGGAGCTCTGGGC
GAATTAAGCCCGGGAGGAGCTCTAATGAGGCAACACCACGCGGCGAGCATGGCCCAGCTG
GTCCCGCCGCCCGCCCGCCAGGAGCTCCAGCGTCTGTACCTGTCATGTGGCGAACTGCTC
CGTGAGTTGTGGCGTTGTTTCCCTCAGCCGGGCGCTCCGCCCGATGACGACGCCGGCACC
AGGGCGGAGAGGTTCTATGACGCTATCATGAGGTTCAGGAACCTTAAGCTGAGGCCGTTT
GAGGAAAAAATGCTACGTGACCTGACACCGCTGGCGTCGTCATTAACAAGACATATGAAT
CAAATGATCGAAACAGCCTGCGCCAAATACGCTGTTTGGCAACAGAGACAAGCTAAACTT
CGGTAG
Protein sequence:
MTTSSEDVLLSVGHVRYKKGDGTLYVMNQRLAWMLENKDTVAVSHKYADIKTQKISPAGK
PKVQLQVVLHDGACSTFHFVNPAGAEAQAKDRDQVKMLLQNLLPKFKRQIDGELEMKSKL
LSLHPTLKHLYEDLVISKVINSEEYWNTPTLKHYTESTNMKQEAGVSGAFLADIQPQTDG
CNGLKYNLTQDIIDAIFKTYPAVRKKHVDYVPNKMTEAEFWTKFFQSHYFHRDRIMSSSS
KDLFGECAKLDDQAIASAMKHTTLDLTVDLPSFKEPIPLLPDDETHEKEKDGTSIHRNMI
KRFNQHSIMVLKASHKNSNSSSSKTNKVENGMKETNGVEKRPSADKDVTEPVDKKRRIME
KIHYEDLDNVDSNEDTQELKLSKVERYLLGPASQVGHTGTSSSNPPPLSALASVCQAWSS
GQQCSRPVRVSAAAAVGALGELSPGGALMRQHHAASMAQLVPPPARQELQRLYLSCGELL
RELWRCFPQPGAPPDDDAGTRAERFYDAIMRFRNLKLRPFEEKMLRDLTPLASSLTRHMN
QMIETACAKYAVWQQRQAKLR