New model in OGS2.0 | DPOGS204965  |
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Genomic Position | scaffold2422:+ 16874-23445 |
See gene structure | |
CDS Length | 660 |
Paired RNAseq reads   | 0 |
Single RNAseq reads   | 5 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011098 (3e-62) |
Best Drosophila hit   | brain-specific homeobox, isoform B (1e-26) |
Best Human hit | brain-specific homeobox protein homolog (2e-25) |
Best NR hit (blastp)   | brain-specific homeobox [Tribolium castaneum] (4e-52) |
Best NR hit (blastx)   | brain-specific homeobox [Tribolium castaneum] (5e-43) |
GeneOntology terms    | GO:0003702 RNA polymerase II transcription factor activity GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0007420 brain development GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent |
InterPro families    | IPR009057 Homeodomain-like IPR017970 Homeobox, conserved site IPR020479 Homeobox, eukaryotic IPR001356 Homeobox IPR012287 Homeodomain-related |
Orthology group | MCL13829 |
Nucleotide sequence:
ATGCAAAAATCTGTGCTTCTGAGAAAGGGGCGTTCTCACCCCCAACCCCCGGCCGGCCAA
CCCTCGCTGGCAGTCGATTCGAGCCGTCGCGCAAGCACGACGCGAGACATACGAAGCGAC
TCCCCTAACAAGGAGCAGAAGACCTCGTTCCTCATAGAGGACATCCTGTACAGAGGGAGG
AACACCTTCAAACAGCCGGAATCGCGGAGATTTGATTACGAGCCGAAGTATTATCCGGTG
GCCAACGACGTCAGACCCGCGGCCAGGGATGGGTCATATTTGCAGGTCATGGGCGCTCTG
GGCGCTTATCTGCACACGCCTAACACTTTCAAAGCAGTCGAAACTCCGTACTTTCTGTCC
CAAGGAGTTCCTTACCACGCGCTGTTCACCCCATCGGAGCTGTCACTCTCGGCGCTGAAG
CATTGCCGCCGGCGAAAAGCGAGAACTGTTTTCTCTGATCCGCAATTGACAGGTCTGGAA
AAGCGTTTTGAATCACAGCGCTACCTCTCAACACCAGAGAGGGTGGAGCTGGCTGGAGCG
CTCAACCTGTCGGAGACACAAGTGAAGACCTGGTTCCAGAACAGACGGATGAAGCACAAG
AAGCAGATGAGGAAACAGCAGCAGCACTCTCCATCCCCAATGTCTTCCATGAGTTTTTAA
Protein sequence:
MQKSVLLRKGRSHPQPPAGQPSLAVDSSRRASTTRDIRSDSPNKEQKTSFLIEDILYRGR
NTFKQPESRRFDYEPKYYPVANDVRPAARDGSYLQVMGALGAYLHTPNTFKAVETPYFLS
QGVPYHALFTPSELSLSALKHCRRRKARTVFSDPQLTGLEKRFESQRYLSTPERVELAGA
LNLSETQVKTWFQNRRMKHKKQMRKQQQHSPSPMSSMSF