| New model in OGS2.0 | DPOGS201688 |
|---|---|
| Genomic Position | scaffold448:+ 13097-13945 |
| See gene structure | |
| CDS Length | 849 |
| Paired RNAseq reads | 1831 |
| Single RNAseq reads | 6759 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010790 (2e-153) |
| Best Drosophila hit | succinate dehydrogenase B (7e-108) |
| Best Human hit | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor (2e-102) |
| Best NR hit (blastp) | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum] (1e-123) |
| Best NR hit (blastx) | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum] (2e-124) |
| GeneOntology terms | GO:0008177 succinate dehydrogenase (ubiquinone) activity GO:0005749 mitochondrial respiratory chain complex II GO:0006099 tricarboxylic acid cycle GO:0009055 electron carrier activity GO:0051536 iron-sulfur cluster binding GO:0006121 mitochondrial electron transport, succinate to ubiquinone GO:0005875 microtubule associated complex |
| InterPro families | IPR001041 Ferredoxin IPR009051 Alpha-helical ferredoxin IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein IPR012675 Beta-grasp fold, ferredoxin-type IPR012285 Fumarate reductase, C-terminal IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site |
| Orthology group | MCL12938 |
Nucleotide sequence:
ATGCCACTGTTAAGAATGACAACTGGTGCTTTTGGGCAACTGCGTACCTTCGCAACGTCA
TCAGCACTCGGTAAGAGGGTAAAGACTTTCGCCGTATATCGCTGGAACCCTGACGAACCT
GACAAGAAGCCTTACACTCAGAACTTTGAGGTAGATCTCGATGACTGCGCGCCCATGGTT
CTTGATGCTTTATTGAAAATCAAGAATGAAATAGATCCCACCCTCACCTTCAGAAGGTCC
TGTCGCGAAGGTGTCTGTGGATCCTGCGCCATGAATATCGATGGGGTCAACACACTCGCC
TGCATCAGTCACATTGACCAGAACTTGTCGAAGCCAACAAAAATTTATCCCTTACCACAC
ATGTACGTAGTAAAGGATCTCGTGCCCGATCTCACCAACTTCTACCGTCAGTATCAGTCT
ATAGAACCATGGCTTCAGCGTGACAATGAGGCTGTGAAAGGTAAGGAGACTCAGCTGCTT
CAAGACGTCGAGGACAGAGTAAAGCTTGACGGTTTGTATGAATGTGTTCTGTGTGCTTGT
TGTTCCACCAGCTGCCCCTCCTACTGGTGGAACGGTGACAAGTATCTCGGTCCCGCAGTA
TTGATGCAAGCTTATAGATGGATAATCGACTCCCGTGACGATGCCGCTGCAAAACGTCTA
TCAAAGCTGAAAGACACATACTCCGTGTACCGTTGTCATACAATCATGAATTGCACCAGA
ACATGTCCCAAAGGCCTAAACCCTGGTAAGGCAATTGCCCAAATTAAAACCCTTCTATCG
GGCATGGTGAAGAAGGAAGCTCCGATCATGGATCCCTCAGGCTTACAGAAACAGGCCGCC
CACAACTAA
Protein sequence:
MPLLRMTTGAFGQLRTFATSSALGKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMV
LDALLKIKNEIDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNLSKPTKIYPLPH
MYVVKDLVPDLTNFYRQYQSIEPWLQRDNEAVKGKETQLLQDVEDRVKLDGLYECVLCAC
CSTSCPSYWWNGDKYLGPAVLMQAYRWIIDSRDDAAAKRLSKLKDTYSVYRCHTIMNCTR
TCPKGLNPGKAIAQIKTLLSGMVKKEAPIMDPSGLQKQAAHN