New model in OGS2.0 | DPOGS204008  |
---|---|
Genomic Position | scaffold2395:- 5545-7412 |
See gene structure | |
CDS Length | 498 |
Paired RNAseq reads   | 647 |
Single RNAseq reads   | 1691 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006476 (3e-08) |
Best Drosophila hit   | tsunagi (3e-50) |
Best Human hit | RNA-binding protein 8A (3e-39) |
Best NR hit (blastp)   | RNA binding motif protein Y14 [Bombyx mori] (2e-85) |
Best NR hit (blastx)   | RNA binding motif protein Y14 [Bombyx mori] (3e-70) |
GeneOntology terms    | GO:0003729 mRNA binding GO:0007310 oocyte dorsal/ventral axis specification GO:0007314 oocyte anterior/posterior axis specification GO:0005737 cytoplasm GO:0000226 microtubule cytoskeleton organization GO:0007312 oocyte nucleus migration involved in oocyte dorsal/ventral axis specification GO:0005634 nucleus GO:0007317 regulation of pole plasm oskar mRNA localization GO:0006406 mRNA export from nucleus GO:0046595 establishment of pole plasm mRNA localization GO:0045451 pole plasm oskar mRNA localization GO:0006396 RNA processing GO:0000166 nucleotide binding GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
InterPro families    | IPR000504 RNA recognition motif domain IPR008111 RNA-binding motif protein 8 IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL12338 |
Nucleotide sequence:
ATGGCTGACGTGTTAGATATTGAAAATTCAGAAGAATTTGAAGTGGACGAAGATGGTGAA
CAGGGTATTGTCCGTCTGAAGGAAAAGGCGCGCAAACGTAAAGGTCGTGGATTTGGATCG
GAGGCAGGCGGAGGCGGCTCCGAAAGAGGCAATAGGGGCAGATATGACAGCCTTGCACCA
GAAGGTAATGGGAATACTCCTGGGCCACAAAGATCGGTTGAAGGATGGATCCTGTTTGTC
AGTAATGTGCATGAAGAAGCACAGGAAGAAGATATTCAGAACCAGTTCTCAGAGTTTGGG
GAGATAAAGAATATTCATTTAAATCTTGATAGACGCACGGGATTCTTGAAAGGCTATGCC
CTAGTCGAGTACGAGACGTACAAACAGGCTGCTAGTGCTAGGGAAGCTCTAGACGGTACA
GACATACTCGGTCAGGCAATCTCTGTGGACTGGTGTTTTGTTAAAGGACCAACCAAGACT
CACAAGAAACGGCGATAA
Protein sequence:
MADVLDIENSEEFEVDEDGEQGIVRLKEKARKRKGRGFGSEAGGGGSERGNRGRYDSLAP
EGNGNTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA
LVEYETYKQAASAREALDGTDILGQAISVDWCFVKGPTKTHKKRR