New model in OGS2.0 | DPOGS206972  |
---|---|
Genomic Position | scaffold18:+ 74121-78158 |
See gene structure | |
CDS Length | 1479 |
Paired RNAseq reads   | 782 |
Single RNAseq reads   | 2130 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | CG18005 (2e-125) |
Best Human hit | protein Red (2e-64) |
Best NR hit (blastp)   | red protein [Culex quinquefasciatus] (3e-154) |
Best NR hit (blastx)   | red protein (ik factor) (cytokine ik) [Aedes aegypti] (3e-149) |
GeneOntology terms    | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR012492 RED-like, C-terminal IPR012916 RED-like, N-terminal |
Orthology group | MCL15468 |
Nucleotide sequence:
ATGGAAGACAGAAGTGTTGAAGACACTCCGGTGTCTCAGAGGCTTACTAACGATGACTTC
AGAAAGTTGTTGATGACTCCTCGATCCACTCCATCTGGTGGCAGTCGGGGGGATGGATCT
ATTCGGGAAGCCATGGCTAGTGCTGGGACCATGCCTCCACCGGTAGAAAACAAGAGTGAA
CTGAGACGTAAAAAGAAATCTTACTATGCCGCTCTGAAGAAGCAGGAAGACAATAAGCTT
GCAGAGTTGGCAGAGAAGTATAGAGATCGTGCAAGGGAAAGACGTGACGGTGTGAACGAT
TTGGTCGTTGACCCCACAAGCAACACTAGCAGCGCTTACAGGGCCGTAGCTCCGGATGCT
AAGTCCGGAATGGATGCTAAGGAACGGCGACGACAAATGATCCAGGAATCCAAATATCTT
GGTGGTGATATGGAGCACACCCACTTGGTGAAGGGTCTTGATTATGCTCTGCTGCAGAAG
GTCCGTTCTGAAATCCAAACGCGGGAAAACGAGCAAGAATTGGAAATGGAACGACTTGTA
TCAGTTCCCATTGAAGCGATACCAGAGAAGAAAGAAGTGTTGCCAGTGGAAGAAGAAATA
CAGTTCGAAAACCCAATGGCTAGAAATATTTACAATCTCATTATAGAGCAGAAGAACAAG
AAGATTACTCGCAACGACCTGTTCGCTCCAGGTCGTATGGCTTATGTTGTTGAATTAGAT
GATGAAGGGACCATAGACAGCGATATACCAACAACCCTGACGAGGAGCAAGGCGGATGTT
CCGGAAATGGATGAACGGACATCAGGCTCCGCCTCCAACGACGTGGTCATCGAGAAGCTG
TCTCAGATATTCTCGTATTTGAGACACGGGCGGCACAGGAAGCTTAAGAAGACGAAGGAC
AAAAATACAGAGAAGGGTCGCAACGACGACTCTATATATGGCGATATTGGGGATTATGTA
GCGGATGACAGGCAAAGTGACCGACGCGATGAACGACCGAGGACTGGATACTTTGACAAA
CCACAGGAGACAGAGAAGGAAGAAGGGCCACTTGTAGGTCGTCGTACGGAGCGCGACCGT
CGCTCGGCGGCGCTCCTGTCCCGGTTGGCAGCGGAGCCCGAGGGCTACGCTGAGTGTTAC
CCCGGGCTGAGGGAAATGAATGACGCCATTGACGATTCAGACGACGAGGTCGACTACACC
AAGATGGACGCCGGAAATAAGAAGGGACCTATCGGTCGTTGGGATTTCGACACTCAAGAG
GAATATTCTGACTACATGAGTAGCAAAGAAGCGCTTCCAAAGGCTGCTTTCCAATATGGC
GTCAAAACACAAGATGGCCGTAAGACGAGGAAGACGAAGGATAAGAGCGAAAAAGCCGAA
CTCGACAGGGAATGGCAACAGATACAAAATATTATACAGAAGCGTAAAACACCACAGTAT
CCTGGGGATGAGAGTAACTTTAAAAAACCTAGATATTAA
Protein sequence:
MEDRSVEDTPVSQRLTNDDFRKLLMTPRSTPSGGSRGDGSIREAMASAGTMPPPVENKSE
LRRKKKSYYAALKKQEDNKLAELAEKYRDRARERRDGVNDLVVDPTSNTSSAYRAVAPDA
KSGMDAKERRRQMIQESKYLGGDMEHTHLVKGLDYALLQKVRSEIQTRENEQELEMERLV
SVPIEAIPEKKEVLPVEEEIQFENPMARNIYNLIIEQKNKKITRNDLFAPGRMAYVVELD
DEGTIDSDIPTTLTRSKADVPEMDERTSGSASNDVVIEKLSQIFSYLRHGRHRKLKKTKD
KNTEKGRNDDSIYGDIGDYVADDRQSDRRDERPRTGYFDKPQETEKEEGPLVGRRTERDR
RSAALLSRLAAEPEGYAECYPGLREMNDAIDDSDDEVDYTKMDAGNKKGPIGRWDFDTQE
EYSDYMSSKEALPKAAFQYGVKTQDGRKTRKTKDKSEKAELDREWQQIQNIIQKRKTPQY
PGDESNFKKPRY