New model in OGS2.0 | DPOGS206976  |
---|---|
Genomic Position | scaffold18:+ 189277-212496 |
See gene structure | |
CDS Length | 1683 |
Paired RNAseq reads   | 89 |
Single RNAseq reads   | 209 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012877 (1e-170) |
Best Drosophila hit   | rabphilin, isoform A (9e-69) |
Best Human hit | double C2-like domain-containing protein beta (2e-50) |
Best NR hit (blastp)   | PREDICTED: similar to Rabphilin CG11556-PA [Tribolium castaneum] (9e-108) |
Best NR hit (blastx)   | PREDICTED: similar to Rabphilin CG11556-PA [Tribolium castaneum] (1e-113) |
GeneOntology terms    | GO:0048488 synaptic vesicle endocytosis GO:0008565 protein transporter activity GO:0008021 synaptic vesicle GO:0016192 vesicle-mediated transport GO:0007269 neurotransmitter secretion GO:0016079 synaptic vesicle exocytosis GO:0017137 Rab GTPase binding GO:0006886 intracellular protein transport GO:0008270 zinc ion binding GO:0016020 membrane |
InterPro families    | IPR018029 C2 membrane targeting protein IPR010911 Rab-binding domain IPR008973 C2 calcium/lipid-binding domain, CaLB IPR011011 Zinc finger, FYVE/PHD-type IPR020477 C2 region IPR001565 Synaptotagmin IPR013083 Zinc finger, RING/FYVE/PHD-type IPR000008 C2 calcium-dependent membrane targeting IPR003315 Rabphilin-3A effector, zinc-binding |
Orthology group | MCL15143 |
Nucleotide sequence:
ATGAACTTACAAAATAAAGCTAATAAGTATGTGTGTCCCAACGATCGACAACTTTCCTTA
CGCGCAAAACTGCGAACCGGTTGGAGCGCTGCCCGCAGTGAACCCCCGCTGACGGCAACC
GAACGGGAAGCTATTGCGGAGGTTGTACGACGAGCTGAGAAAGTCGATGAGGTCGAAGCC
CGACGAATCGGCCGACTGGTTGCCCGACTTGAAGGTATGCGTAGATCAGCTCAAGGGCCG
GCGCCAAGAAGTTGTCTGCTCTGCGGCGAAACCGCTAAGCTCCTGTCTCCGCTGCGAAGA
TGCTCCATGTGCCAACATTGGGCCTGCTCTAAATGTGTCATAGAAACACCATCACAGCAC
AGGCCGTCTATATATTCAAGAGATCCGTACATGTGCAACCTTTGTGCTGAAACAAGAGAG
ATGTGGAAAAAATCCGGAGCATGGTTCTTTAAGTCATTACCAAAATATGTCCTGCCATCT
AAGAAACCAACCGGGCGGTACAACGACTCTGATATTGCTAAAACACTTCAGGAACCAGGT
ACGAGCAGTAATGATTGTAAGACAGACTCCGATCCTGGTACCCTACACTGTATGCCTCCG
CCTTCATTCTCAAGACAACCTAGCAACACTGACAGCAGAAAATCGGTCAGCTCAACACAG
GATATCGAATGGAGCGAAACTGACATCCTTAGCCACGGTGTCAGCGGCATCAGTCTCCAA
CGAGCTGACAGCATCAATCAAAGACCGCTGTGTCTCAAACGCACTAGCAGCAAAGGCAGC
GCCTACAGTCTCAGAAACATAAGAAAGGACATGTCTAAACCGATCACGCAAGTCGAAAGA
CCTCCGACGATTCCCGACGCTGGTTTCGGTACCATAGAAATTAAACTCTCTTATGACAAC
GGAACCTCTTCATTGGCCGTAACAGTGTTAAGGGCTAGGGGCTTGATCGGTATGGACATG
ACGGGTCTGTCTGACCCCTTCTGTAGATTGGAAGTATTGCCACGGGAAGGTGCATACTTT
AATCGTTTGAGGACAAAAACTGTTCACAAGACAAAGAATCCTGAATACAACGAGACACTA
CATTTCTTCGGCATCACTGAATCGGATTTATCTATAAAGTCGCTTGAATTGGTTGTGTTC
GACGACGATCGATACGGCTGCGATGAAATGGGTTCAGCGACAGTTGCTTTACGCGAATGC
CTAAAGACCCCGGCTCAGCTGCGTCTCGCACTCTCCGGGTCCTCAGGCTGCGAGCCGATA
GGACCGAGACTCCTGCTAGCATTATGTTACAGTACCAAGAAACGGGCACTGGTGGTCACC
GTGTGTAGAGGAACCGACCTCCCACCACAAGATAGCAACGGATACTCAGATCCATTCGTT
AAACTACATCTCGACCCGGACCCGTATCACAAAAAACATAAGACGTCTATTAAATGGCGA
AACCTAAATCCTGTTTGGAACGAAGAATTTTATTTCGAGACACGTCCGACGGAGCTTTCC
CGCCAAAATTTGACTTTGACAGTTTGGGACAAAGACTACGGCAAACCGAATGACTTTCTT
GGTAGCTTGGTGCTCGGCGCGAGCAGCAAAGGTAGAAGACTGAAACATTGGATGGACTGC
ATTAAATTCCCGGATCACCGTCACGAACAATGGCACTCGTTAACTGATATTCAACACTTG
TAA
Protein sequence:
MNLQNKANKYVCPNDRQLSLRAKLRTGWSAARSEPPLTATEREAIAEVVRRAEKVDEVEA
RRIGRLVARLEGMRRSAQGPAPRSCLLCGETAKLLSPLRRCSMCQHWACSKCVIETPSQH
RPSIYSRDPYMCNLCAETREMWKKSGAWFFKSLPKYVLPSKKPTGRYNDSDIAKTLQEPG
TSSNDCKTDSDPGTLHCMPPPSFSRQPSNTDSRKSVSSTQDIEWSETDILSHGVSGISLQ
RADSINQRPLCLKRTSSKGSAYSLRNIRKDMSKPITQVERPPTIPDAGFGTIEIKLSYDN
GTSSLAVTVLRARGLIGMDMTGLSDPFCRLEVLPREGAYFNRLRTKTVHKTKNPEYNETL
HFFGITESDLSIKSLELVVFDDDRYGCDEMGSATVALRECLKTPAQLRLALSGSSGCEPI
GPRLLLALCYSTKKRALVVTVCRGTDLPPQDSNGYSDPFVKLHLDPDPYHKKHKTSIKWR
NLNPVWNEEFYFETRPTELSRQNLTLTVWDKDYGKPNDFLGSLVLGASSKGRRLKHWMDC
IKFPDHRHEQWHSLTDIQHL