| New model in OGS2.0 | DPOGS215299 |
|---|---|
| Genomic Position | scaffold25:- 136350-137791 |
| See gene structure | |
| CDS Length | 921 |
| Paired RNAseq reads | 101 |
| Single RNAseq reads | 896 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007612 (1e-64) |
| Best Drosophila hit | CG7849, isoform B (6e-57) |
| Best Human hit | probable tRNA pseudouridine synthase 2 (6e-42) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP002077-PA [Tribolium castaneum] (7e-80) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP002077-PA [Tribolium castaneum] (1e-71) |
| GeneOntology terms | GO:0009982 pseudouridine synthase activity GO:0001522 pseudouridine synthesis GO:0003723 RNA binding GO:0006396 RNA processing |
| InterPro families | IPR020103 Pseudouridine synthase, catalytic domain IPR002501 Pseudouridine synthase II |
| Orthology group | MCL14771 |
Nucleotide sequence:
ATGGTAAACATTAAAGATGCTGCACTCGCATACAAAACTTTAAATGGAATTATTTGTGTT
TATAAACCATCCTGCGTTAGTGTGCGTCAAGTTCAGAATACAATTTTAACTCATTTATGT
AGAGATTTAAACTCCTTACCCGACCGACAGCTTGAAAAACGAGTTGAGATTATTGGTGCA
ACAAATGAACCAATGCAAGTTAAATTGGCACCAAACTATGCAGACCATCCACTTGCATGT
GGTCCACGATACATAAAAGAAGACTTCCGATGCAGTTGGGCTACTCATTTAGGCTTATTT
AGTAGTGGGGTTTTATTGTTAGGGATCAATGATGGAACAAAACTTACATACCAAATAAAT
ACAGCGAGACCAACAAGGGCATTCAAAGTACACGGGCAGTTTGGAAAAGCAACGGATACA
TATTTTTGGAATGGACGGACAATGGAACGAGCTTCTTACAAACATGTTACAAGGGAAAAA
CTAGATAGAGTTGTAGCTCATATACAGGCCGCTCATCAGAAAACTATGTTCGAATTATCA
GGTCTTCATATGGAGTCCCAAACAGCTTATGACTTGGCATCACAGGGTCTCATAAGACCA
GCTAACAGTAAATTACCGATCATTTATGGAGTCAAATGTGTGCATTTCGATTCCCCCAAT
TTCACGTTAGAGATTCAGTCAGTGAATGAATATGATAAATATTTGTGGACTCTAGTCCAT
GATTTAGGCATTCAATTGAAGACAGCAGCTCACTGCACAGGGTTGCAGTGTATCAGACAA
GGACGGTTCAATCTACAATTAGCACTGTTAAGAAAACACTGGCAACTCAATCATATATTA
AATAATATGGATCAGTGTCGCCAACTGTTAGAAGAAAATGAAAACTTATTGAAGCCTAAA
TCAGCCCATCTAACTGTTTGA
Protein sequence:
MVNIKDAALAYKTLNGIICVYKPSCVSVRQVQNTILTHLCRDLNSLPDRQLEKRVEIIGA
TNEPMQVKLAPNYADHPLACGPRYIKEDFRCSWATHLGLFSSGVLLLGINDGTKLTYQIN
TARPTRAFKVHGQFGKATDTYFWNGRTMERASYKHVTREKLDRVVAHIQAAHQKTMFELS
GLHMESQTAYDLASQGLIRPANSKLPIIYGVKCVHFDSPNFTLEIQSVNEYDKYLWTLVH
DLGIQLKTAAHCTGLQCIRQGRFNLQLALLRKHWQLNHILNNMDQCRQLLEENENLLKPK
SAHLTV