| New model in OGS2.0 | DPOGS201945 |
|---|---|
| Genomic Position | scaffold444:- 76114-88151 |
| See gene structure | |
| CDS Length | 1500 |
| Paired RNAseq reads | 124 |
| Single RNAseq reads | 530 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006579 (1e-19) |
| Best Drosophila hit | GluClalpha, isoform C (6e-26) |
| Best Human hit | glycine receptor subunit alpha-3 isoform a (7e-27) |
| Best NR hit (blastp) | PREDICTED: similar to glycine receptor beta precursor, putative [Acyrthosiphon pisum] (2e-106) |
| Best NR hit (blastx) | PREDICTED: similar to glycine receptor beta precursor, putative [Acyrthosiphon pisum] (3e-102) |
| GeneOntology terms | GO:0005230 extracellular ligand-gated ion channel activity GO:0006811 ion transport GO:0016020 membrane GO:0016021 integral to membrane GO:0045211 postsynaptic membrane GO:0006810 transport GO:0030054 cell junction GO:0004872 receptor activity GO:0045202 synapse GO:0005216 ion channel activity GO:0005886 plasma membrane |
| InterPro families | IPR006028 Gamma-aminobutyric acid A receptor IPR006201 Neurotransmitter-gated ion-channel IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain |
| Orthology group | MCL21810 |
Nucleotide sequence:
ATGTGGACGCAGCTGATGCCATTGCTGGCGCTCGTCGCGCTGGCGGATGGCGTTTCCTTC
GCGCCTAACAAAGAACTGCTTGAATGTGCAAGCCAGATCCTGTATATGGACCAATACGCA
TACCAGCTTCCAACAAACTACAGTAGAAACATTCCACCTGGTAAAAATACGACAGTTTAT
ATTGGAGTGAACGTCAATAGAGTTTCTGGAGTGGATGAAAATCGAGAGGAGATCACACTT
GACGTTTTCCTGCAAGCATCATGGGAGGAGGCTAGATTAAAAGTTCCCCCCGGTATGCCT
TTCATCGATCTACCCTGGGAATTCCGACAACTAATATGGACTCCGGATCTTTATATATGG
CAGCTACAAACTATGAAAATTCTCTCAGTGCTCCAAGAAATGGCATCATTGAGACTATAT
GCTAATCGCACTGTCTCAGTCAGTATTGGTGCTACAATTACAATAAAATGTGAAATGAAC
TTTGTTTTGTATCCATTGGACGTGCAAAACTGCGCGATAGACTTTAGCAGCTATAAGTAC
ACAAAAGAAGATGTGCGGTTCGAATGGCGTGAAGTGGCGCCGTGGTTCGGGCTGGCCGGC
GAACAACGCCGAGAGTTTCGTCTGCCAAAATACGTGGTCACATTTGTTACCGACAAAAGT
AATCATATTCGCAATTTTGGTGAAGGTGAACATTCAGCGGCGCGATTGCAAATAAAACTT
TCGCGTGAACTGAGAGGGTATCTTCTAGAGAGCTACCTACCATCGTCCTTATTTGTCATC
ATCTCCTGGGGAAGCTTCTGCGTTATCCCGGAAATTGTTCCGGGTCGTATGGTGCTGCTT
GTCACGACATTACTGTCACTTATTACTATGTTTGACACTGTCAGCACTAACTCACCGGAC
GCGTTAGAGCTAAAGTGTATCGAGGTTTGGCTGATCTCATGCACTATATTCGTATTCCTG
GCACTGCTGGAGTACTTCGTGGTGTTGTTCGGCATCCGATATGACAAAAGTTGGAGCCGA
CGACGGCAAGACCTACGACGGGCCGCCTCTGCCGCGCAGCTGGCGCCGCCTCTGCATATT
AACCATTCTCAAAATTTGCAGAGATTAGGCACACCTGTCACTGGCACGCCTCAAGGTGGA
GTATTTTCACCGCAACTTAGTGTAGAAGATGAAGGATTAAAGCAACAGTTCTCTCACCAG
ACCATACAACGGTTAACATCTTCGGAGAGAAGGCTTCGAAGATCCAATAAAGTTGGATGT
GAGACGAGAACAGTTAGTAAGGACTCGCCAATACTGGAGACAATGACAGCTGGTGATTCT
TCGGGCAGTTTCTTGGTGAGACTTGCTGCCATGGTCGACCGCGGCGTCATGTTCTGTGGC
GCCCAACACGGGGCACTTGACAAATTCGCCCTAATGATTTTTCCTATATGCTTTATACTC
TTTACAATTATTTATTGGACGACATATATCAGTGAAGCATATCGGGCTATGCACGAGTGA
Protein sequence:
MWTQLMPLLALVALADGVSFAPNKELLECASQILYMDQYAYQLPTNYSRNIPPGKNTTVY
IGVNVNRVSGVDENREEITLDVFLQASWEEARLKVPPGMPFIDLPWEFRQLIWTPDLYIW
QLQTMKILSVLQEMASLRLYANRTVSVSIGATITIKCEMNFVLYPLDVQNCAIDFSSYKY
TKEDVRFEWREVAPWFGLAGEQRREFRLPKYVVTFVTDKSNHIRNFGEGEHSAARLQIKL
SRELRGYLLESYLPSSLFVIISWGSFCVIPEIVPGRMVLLVTTLLSLITMFDTVSTNSPD
ALELKCIEVWLISCTIFVFLALLEYFVVLFGIRYDKSWSRRRQDLRRAASAAQLAPPLHI
NHSQNLQRLGTPVTGTPQGGVFSPQLSVEDEGLKQQFSHQTIQRLTSSERRLRRSNKVGC
ETRTVSKDSPILETMTAGDSSGSFLVRLAAMVDRGVMFCGAQHGALDKFALMIFPICFIL
FTIIYWTTYISEAYRAMHE