| New model in OGS2.0 | DPOGS201947 |
|---|---|
| Genomic Position | scaffold444:- 61705-69336 |
| See gene structure | |
| CDS Length | 3279 |
| Paired RNAseq reads | 219 |
| Single RNAseq reads | 595 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006580 (0.0) |
| Best Drosophila hit | CG31156 (2e-117) |
| Best Human hit | S1 RNA-binding domain-containing protein 1 (6e-108) |
| Best NR hit (blastp) | PREDICTED: similar to S1 RNA binding domain protein, putative [Tribolium castaneum] (7e-139) |
| Best NR hit (blastx) | PREDICTED: similar to S1 RNA binding domain protein, putative [Tribolium castaneum] (1e-133) |
| GeneOntology terms | GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GO:0016788 hydrolase activity, acting on ester bonds GO:0003723 RNA binding |
| InterPro families | IPR006641 YqgF/RNase H-like domain IPR022967 RNA-binding domain, S1 IPR023319 Tex-like protein, HTH domain IPR023323 Tex-like domain IPR023097 Tex RuvX-like domain IPR012340 Nucleic acid-binding, OB-fold IPR003029 Ribosomal protein S1, RNA-binding domain IPR018974 Tex-like protein, N-terminal IPR019410 Nicotinamide N-methyltransferase, putative IPR016027 Nucleic acid-binding, OB-fold-like |
| Orthology group | MCL17041 |
Nucleotide sequence:
ATGGATGTATTAAATAGTAACAGTAATAATACGGATAAAGTTGATGTCATAGTTCGCAAT
CTAAAGTTATCATTCTTCAAGGGTTCACAGTATAATTTTAAAGACGGTGATGTTAAACAA
ATAACTTGGGACCAACAAAATAAATTTCTTAATCAAACAATTTATTCATCACATTTTAAG
AAATATCCATGTAACCAAGATTTTTGTAGGCTTTTTTTCAAAAACTTAATAACCCAAATT
GAAAAATATCATGAAGTACATGATGGCATGTATGAATTCTTATGTTCCTCAATGAAAGAG
AACAAGCATAACACATTTTCATACCAGCACTATTACATAAAAAATGATCATAATATCATA
ACTATTAAACAAACAAGAAATATGGTCTTAAATGGTACAACGGGGTTAAAAACATGGGAG
GCTGCCTTCATGCTGGCTGACTGGGCTCTATTTAATAAACAAATGTTTTTTAAAAAACAT
GTCCTTGAATTGGGTGCTGGTGTTGGTTTCACCGGTATAACAATAGCTAAGTATTGTGCC
ATAGAATCAATGACTATGTCTGATCACCATCCGGAAGTTCTTCAAGTTATATGTGATAAC
ATAGAAATTAACTTTCAATCAGCAAAAAAATGTACAACATCTCATTCTACTGTGTATGAA
ATAAATGATAAGACTATAGGTGCAATAATGCTTGATTGGAACGAGCCGGAAGAGGAAAAA
GATTTAACACCAGATATTATAATTGGAGCTGACATTATTTTTGATCCTTCAATATTAAAA
CCACTTATTAACATACTTAATTCATTTTATCAGAAAAATAATGAAGTTGAAATATACATT
CTCAGCGCTATTAGAAATATAGACACTTTTAATGGTTTTCTAGAAGAATTAAGAAATCTC
AATATGGAAAAAGTTACTAGAAAACGAAAACTAGAAGATTCTAAAGATGTAACAAAACCA
GTACAGAATTATAAGAAAACTAAAGTCTCTTCTACGGCTAAAAAAGCTGCAGTAATAAAA
GTAAAGAGAACTGGTCAAAAAGAAGTCAAAGATGATGGATCTGAATCTATTGAAACATCT
GAATGTAAAGAAAATATTATGCAAAGTGACCAGTATGATGTTATATTTGACCAAGCTAAA
ATGTTATCATGTTCTGAAAAAATATCTGTAAGTGTAGCTCAAAACTTTATTAATCTATTA
TCAGAAGGATGTACATTACCATTTATTGCAAGGTATAGGAAAGATGCCGTTGATCACCTT
ATGCCTGACAGACTTCAAGAACTCTATGAAAGCTATCAACATATAATACAACTTAAAAAA
AAGGTTAAATCTGTGTTAGAAACTCTAAAGAAATCAAATAAATTGACCCCAGAGATTGAA
CAAAGCCTTTTAAGTGCGAGGAATTTATCAGAAGTTGATTTGGTGTATGGTCCTTTAAAA
TCACATTCTCAATCATTAGCTGAAAGAGCCAGAAGTTTGGGTCTTGAACCTCATGCATTG
AACGCTCTTAATGGTGATTATGTCGAAATCAAATCTCTTTGCGATGGAAGTGAAGAGTTG
GCTAATTTTGAAAAAGTTGAAGCCCATGTGACTCATATTGTAGCCGATATAATATATAAA
GATACAAGAGTGATTGAACAAATGAGGAATTTGAAAGAAGAAACAAGGTTTACATTACAA
AGCAGTAGAGTGAAATCCACAAAGACAAAACAGGAGACGGTTATGAAATATGACACCAAA
TCTGATCCCCAGACTTATAAATTGTATTTCGACTGGAAGTGTCCTATTCAATTTGTAAAA
TGCTATCAGACATTGGCTGTGAATAGGGGGGAAGATGAAAAGATACTTTCTGTGAAAGTT
ATTATTCCTGATTGGTTCTACAATAAACTTGAACGGTTCTGTCTCACTTTATGGAAAAGC
AATTACTGGGTTCATAAAGGTCTCGGTGATGCTTACAATCGTCTGATAAAACCCTGGCTC
TCAAGGAAAGTCAGATCAGATTTGACAAGTTTGGCCGAAAAGGAAGCTGTTAAGACATTT
AGCACAAATTTAGAGAAATATTTATTGACTGAACCCATAAAGAATAAAACTATAGCTGGA
TTGGACCCTGGTTTCAAAGCAGGATGCAAGGTTGGTATAATAGATGCTACTGGAACTATG
TTGGAAGCATGCAACATATACCCAAATTTTAATTGCAACAATAATGATCCAGCGGCCAGA
CAACTAAGTGGTCTCTTATCTAAACATAGTGTAGATCTCATTGGTCTTGGTAATGGAACA
GCGTGTAGAGAAACTGAATCCTGGTTAAAGAGACACAAAATATCAGAACACATTCCTGTC
ATCATAGTTCCGGAGCAAGGCGCTTCTATATATTCAATTAGTAAGGAAGCTCAGAAAGAA
CATCCAAATATGGATCCAAATTTGATATCGGCTTTGTCATTAGCTAGAAGAGTGTTGGAT
CCGTTAGGGGAATTGATAAAGGTGGAACCGAAGAATTTAGGTGTTGGTTTATACCAACAT
GATATTCCACCTAAATTGTTGGAATCAGCCTTAGATATGACGGTGGAGAAAGTTGTGAGT
TTGGTTGGAGTTGATATCAATACTGCATCACAGGCCATGTTGAGGCGTATTGCTGGTTTA
AATGACGGCCGTGCGAAAAAAATAATAGCGTATAGACAAGAAAATGAAAGGTTTAAAACT
CGTGCTGAGTTATTAAAAGTTCCTGGTATAGGAAAAGTTACGTACCAACAATGTGCTGGG
TTTTTGAAAGTTTTGGGAGGTCTAGAGCCGTTGGACACGACTATTATACATCCTGAGAGC
TATTCCGTTGCTAAAACATTTGCAAAAAAAATCGGCGTAAACGTCAAAGACTTAACCGAC
GCCCGATTTCCTGAAGATGTAGAAAGGAAATCCAGAAGTATAGATATATCGGCTATGAGT
AAAGAACTTGACACCGATATAAGTAATTTAGAGTTGATTATAAATGCGTTCAAACTGAAG
GCCTATGAAGACAATGTGATTACGTTCTGTAGACCGGTGTACTCTATGGTAGTTCAAGCA
AGCGATCAATTGGAGAAAGGAATGTCTTTGACAGGTGTAGTCCGCAATGTGGTGCCGTTC
GGTTGTTTCGTGGATTGCGGTGTTGGTGACAACGGACTCATACACACCAGCAACATGGCG
AACGCTAACCTCAAGCTGGGAGACAGGGTCGCCGTTACGGTCATATCAACACCGAAACCA
AAGAAAATACAACTCAAACTAGACAGAATATTGGACTAG
Protein sequence:
MDVLNSNSNNTDKVDVIVRNLKLSFFKGSQYNFKDGDVKQITWDQQNKFLNQTIYSSHFK
KYPCNQDFCRLFFKNLITQIEKYHEVHDGMYEFLCSSMKENKHNTFSYQHYYIKNDHNII
TIKQTRNMVLNGTTGLKTWEAAFMLADWALFNKQMFFKKHVLELGAGVGFTGITIAKYCA
IESMTMSDHHPEVLQVICDNIEINFQSAKKCTTSHSTVYEINDKTIGAIMLDWNEPEEEK
DLTPDIIIGADIIFDPSILKPLINILNSFYQKNNEVEIYILSAIRNIDTFNGFLEELRNL
NMEKVTRKRKLEDSKDVTKPVQNYKKTKVSSTAKKAAVIKVKRTGQKEVKDDGSESIETS
ECKENIMQSDQYDVIFDQAKMLSCSEKISVSVAQNFINLLSEGCTLPFIARYRKDAVDHL
MPDRLQELYESYQHIIQLKKKVKSVLETLKKSNKLTPEIEQSLLSARNLSEVDLVYGPLK
SHSQSLAERARSLGLEPHALNALNGDYVEIKSLCDGSEELANFEKVEAHVTHIVADIIYK
DTRVIEQMRNLKEETRFTLQSSRVKSTKTKQETVMKYDTKSDPQTYKLYFDWKCPIQFVK
CYQTLAVNRGEDEKILSVKVIIPDWFYNKLERFCLTLWKSNYWVHKGLGDAYNRLIKPWL
SRKVRSDLTSLAEKEAVKTFSTNLEKYLLTEPIKNKTIAGLDPGFKAGCKVGIIDATGTM
LEACNIYPNFNCNNNDPAARQLSGLLSKHSVDLIGLGNGTACRETESWLKRHKISEHIPV
IIVPEQGASIYSISKEAQKEHPNMDPNLISALSLARRVLDPLGELIKVEPKNLGVGLYQH
DIPPKLLESALDMTVEKVVSLVGVDINTASQAMLRRIAGLNDGRAKKIIAYRQENERFKT
RAELLKVPGIGKVTYQQCAGFLKVLGGLEPLDTTIIHPESYSVAKTFAKKIGVNVKDLTD
ARFPEDVERKSRSIDISAMSKELDTDISNLELIINAFKLKAYEDNVITFCRPVYSMVVQA
SDQLEKGMSLTGVVRNVVPFGCFVDCGVGDNGLIHTSNMANANLKLGDRVAVTVISTPKP
KKIQLKLDRILD