Genomic Position | scaffold2131:+ 9463-15258 |
---|---|
See gene structure | |
CDS Length | 759 |
Paired RNAseq reads   | 10 |
Single RNAseq reads   | 36 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009954 (2e-06) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | endonuclease-reverse transcriptase [Bombyx mori] (2e-95) |
Best NR hit (blastx)   | endonuclease-reverse transcriptase [Bombyx mori] (6e-86) |
GeneOntology terms    | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10020 |
Nucleotide sequence:
ATGCAGGCTATACCTGGAAACAGGGATGTAAGTAAGGCATTCCAGAATTCTCTGTTCCAC
CATACATACGTTAATGTTAACATTGAAGTTAGGCTTTGTCTAGCATTCGTGGACTATGAG
AAAGCTTTTGACTCGATTGAAACCTGGTCTGTTGTGGAGTCCCTGCAACGTTGCCAATTT
GATTGGCGGTCCGCCACCATGTCCGTCCAATTACAGAATCAGCAAACAAGTCCCATACCA
TTGCATCGAGGAGTGAGACAAGGGGACGTTATCTCCCCGAAATTGTTCACAAATGCAATG
GATGATATGTTTAAGACGCTGCGCTGGAAAGGACGAGGTATCAACATTAATGGCGAACAC
ATCTCTCACTTGCGATTTGCAGACGACATCGTCATTATGTCAGAAACGCTGCAGGATCTA
CAACAGATGCTTGATGACCTGGCTGACTCTTCTATACGCATCGGCCTACGGATGAACTTG
GACAAAACCAAGGTCATGTTCAATGAACATGTCCTACCGGAACCGATTGCAGTCCACGGT
GTCGTTCACGAAGTTGTTCAAAAATATGTCTATCTGGGGCAAGTATTGCAGTTGGGTAGA
AACAATTTCGAGGACGAGGTGAGTAGAGGAATTCAGCTGGGTTGGGCAGCGTTTGGGAAG
TTAAGCCGAGTCTTAACATCGTCGATTCCACAATGCCTAAAGACGAAAGTCTTCAATCAG
TGCGTCCTACCCGTAATGACTTACGGTGCCGAAACGTGA
Protein sequence:
MQAIPGNRDVSKAFQNSLFHHTYVNVNIEVRLCLAFVDYEKAFDSIETWSVVESLQRCQF
DWRSATMSVQLQNQQTSPIPLHRGVRQGDVISPKLFTNAMDDMFKTLRWKGRGININGEH
ISHLRFADDIVIMSETLQDLQQMLDDLADSSIRIGLRMNLDKTKVMFNEHVLPEPIAVHG
VVHEVVQKYVYLGQVLQLGRNNFEDEVSRGIQLGWAAFGKLSRVLTSSIPQCLKTKVFNQ
CVLPVMTYGAET