| New model in OGS2.0 | DPOGS213985 |
|---|---|
| Genomic Position | scaffold295:+ 15887-20105 |
| See gene structure | |
| CDS Length | 2058 |
| Paired RNAseq reads | 683 |
| Single RNAseq reads | 3012 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008208 (2e-29) |
| Best Drosophila hit | XRCC1 (2e-15) |
| Best Human hit | DNA repair protein XRCC1 (1e-21) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC007398 [Tribolium castaneum] (2e-52) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC007398 [Tribolium castaneum] (3e-56) |
| GeneOntology terms | GO:0003684 damaged DNA binding GO:0005622 intracellular GO:0000012 single strand break repair GO:0005634 nucleus |
| InterPro families | IPR002706 DNA-repair protein Xrcc1, N-terminal IPR001357 BRCT IPR008979 Galactose-binding domain-like |
| Orthology group | MCL14199 |
Nucleotide sequence:
ATGCCTCGAGTTAAAATTGATTACGTTGTGAGCATGAGCAGTGAGGACCCTGAAAATCCG
GCAAACAATTTATTATCGTGGGAAATAAATAAAAAGAAATGGCTTTGTAAGACGGGGGAG
ACCTCTTGTTCAGTAGTTCTACAGCTGACTAAGGCTGTCCAGATAGAATCGATCACGATT
GGAACATACCACACGTCTATGTTAGAGGTGTTAGTAGGATCATCAGAGAAGCCCAATGAA
ACCTTTGAGGTGTTAGTCCCGAGTTGTGTGCTGTGTTCTCCACGAGAGGCTCGCGGAGCA
CCAGTTGAGAGAGTGAAGAGCTTTACACGAGATGAACTGACATCTGTCCGACAGAGACGC
TGGGACCGATTGAGACTAGTCTGCTCACAACCTTACAACAGACACTGCAAGTATGGAATC
TCATTTGTTCATATCTTTGAACCGGAAAGTCCAACTCTGTCCGGTCACACAGCCTTGTCC
ATCTCTCGCACGTTCCGCCTCGAGGAGCTTGGTTCAGAGGATGAAGAGTTCCGTCCTGGG
GAACTGTTCCATAAACACAAACAAGACCAGAAAACACATAATAGTACTGACGCACAAATC
AGACAAGCTACGTCGCGGGCACTGAACAACATAGGCGACTCCTCCACCAGATTAACAAAG
ACGCCAATATCGAAAACTAGCAACAGACCGTCTGATCAAAGCTCGAATTATTCCACTCGA
GAAAAGAGGAGTCTCATGTATACAGAGGATGACGAGCAACCACACCAGAAAATAGATAGA
GTTATAGAAAGACATGGGAGAGAGAAACAGAGAGAAGATGGAAAAAAGAAAACTGACCAG
GAGGCCAAGAAGAAGAAGACCGGCAGTAAGAGAGAAGAAAGTAAGGAAGATGAGAAGAAC
AAGGAGACAAAACATACAGACAATCGGACTCAGGACCAGACACATACTACATTAATGAAT
TCCACTAAAAGGAAACACTCCCAGGAAGCCCCATCCCGGGCTCCGGCCCGTCCCCTGTCT
TCTCTTCTGTCGGATGTGGTGTTCTCTATTTCGGGATACGTGAACCCGCGTCGAGCGTCG
GTCCGCGCGGCCGCTCTCCGGATGGGTGCGCACTACACGCCCGACGTCACCGCCGACTGC
ACACATCTCATCTGTGCCTTCCCCAACACTCCAAAACTCCGCCTGGTGCGGGGAAGTGTG
GCCGTCGTCAAGGCCGAGTGGGTCGAAGACTGTCTGCGCTCGGGGACCAGGCTGAAGGAG
ACAACATACGACACGAGGGGAGGGGCGGGGGGGCGCCACCAGGACAGTGAGAGGACGGGA
GACGGGGGAGGAGGAGGGAGGGGGCGATGTAGTAACGGTGACTCCGCAGAGACGGAGCAT
GACACGGACGACGAAATAGAACAAGTCATGCGACGACAAAAGAGAAAACGACTCAGTGAA
GAGGAAGAAGAGGGAGGGGAGGAAGACCGGGATGTGATGTGCGACACGGACGAGGAGGAC
GGAGAACAGAGGCGGGAGGAGATAGACGCCCGTAAGGTGAGGGGTCGAGTGACAGTCAGG
TCTCAATATAGTGTAACAAGAGTCCCGGAGACGGGAGACGACCTCAGCAGATCGCAGGAC
AGAGGCGTGTGTGTGCAGTCGCTGCCGACGTTCCTGGCGGGAGTGACGTTCTCCCTGTGC
CCGGAGCTACCGGTGTGTGAGCGCGCGCTCCTGGAGCGGTACATCACAGCCTACGGCGGG
GTGGTGCTGCAGGTCGGTCTGGTCTGCTGTGCAACGTCAAATATCACTCAGGGGAAGAGG
ACGAAGGAGGCAAGGCGTGAGATTCACGAAGGCAAACTGCGGATGATGCGGATGGTAACA
GTATGGTGTCGGCGGGAGGAGGATCGCGGAAAAAACTCTGGAACGGAGCTTGGTCAAGTA
GGTCGACGAGCGCAGCACAACATTTTGACTGAACACTCTCTTCCGACTCCGTACGCAAGA
AAGAAAATTGACGATAAGTTTATTACTGCCTGGAAACTTTTATTGGATGATAATATTCTG
CGTCGTATAGAGAAGTAA
Protein sequence:
MPRVKIDYVVSMSSEDPENPANNLLSWEINKKKWLCKTGETSCSVVLQLTKAVQIESITI
GTYHTSMLEVLVGSSEKPNETFEVLVPSCVLCSPREARGAPVERVKSFTRDELTSVRQRR
WDRLRLVCSQPYNRHCKYGISFVHIFEPESPTLSGHTALSISRTFRLEELGSEDEEFRPG
ELFHKHKQDQKTHNSTDAQIRQATSRALNNIGDSSTRLTKTPISKTSNRPSDQSSNYSTR
EKRSLMYTEDDEQPHQKIDRVIERHGREKQREDGKKKTDQEAKKKKTGSKREESKEDEKN
KETKHTDNRTQDQTHTTLMNSTKRKHSQEAPSRAPARPLSSLLSDVVFSISGYVNPRRAS
VRAAALRMGAHYTPDVTADCTHLICAFPNTPKLRLVRGSVAVVKAEWVEDCLRSGTRLKE
TTYDTRGGAGGRHQDSERTGDGGGGGRGRCSNGDSAETEHDTDDEIEQVMRRQKRKRLSE
EEEEGGEEDRDVMCDTDEEDGEQRREEIDARKVRGRVTVRSQYSVTRVPETGDDLSRSQD
RGVCVQSLPTFLAGVTFSLCPELPVCERALLERYITAYGGVVLQVGLVCCATSNITQGKR
TKEARREIHEGKLRMMRMVTVWCRREEDRGKNSGTELGQVGRRAQHNILTEHSLPTPYAR
KKIDDKFITAWKLLLDDNILRRIEK