New model in OGS2.0 | DPOGS213127  |
---|---|
Genomic Position | scaffold889:- 24231-38537 |
See gene structure | |
CDS Length | 2346 |
Paired RNAseq reads   | 323 |
Single RNAseq reads   | 788 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007888 (0.0) |
Best Drosophila hit   | Hr4 (2e-102) |
Best Human hit | nuclear receptor subfamily 6 group A member 1 isoform 1 (5e-29) |
Best NR hit (blastp)   | nuclear receptor GRF [Bombyx mori] (0.0) |
Best NR hit (blastx)   | hormone receptor 4 [Manduca sexta] (0.0) |
GeneOntology terms    | GO:0005634 nucleus GO:0004879 ligand-dependent nuclear receptor activity GO:0007552 metamorphosis GO:0003707 steroid hormone receptor activity GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent GO:0008270 zinc ion binding GO:0003700 sequence-specific DNA binding transcription factor activity GO:0035073 pupariation GO:0030518 steroid hormone receptor signaling pathway GO:0040007 growth |
InterPro families    | IPR001628 Zinc finger, nuclear hormone receptor-type IPR001723 Steroid hormone receptor IPR013088 Zinc finger, NHR/GATA-type IPR008946 Nuclear hormone receptor, ligand-binding IPR000536 Nuclear hormone receptor, ligand-binding, core |
Orthology group | MCL12660 |
Nucleotide sequence:
ATGACGACATTCGCGTTCAGTCGTTATCGTGATTTTGCCGAATCTAGAGGCAAGCTGTCG
GCCAGCGACAGGCTGGGACCAGAGGCGCTGGACGCCTCCGCACACGCACTACAGCTACAG
ACGATGACATCCACAATGGGAATAATGACACTCAGCCGCGGCCCGTGTGACCTCGACAAC
ATGAGTCTGTTCCAAGACCTCAAACTGAAGAGGCGGAAAGTTGACTCCCGATGTAGCAGT
GATGGCGAATCGGCAGCCGACACCAGTACGTCATCGCCAGACCCGGGGCCGCCATCACCG
CGCATGGCCGAGGCGGGGTGCAGTACGCCGCCTCATCCGCCGCCAGTGTTCGACGGCGGC
GGCTCACCCTCACCTTCGCCTTCATGCCATCCCACCGTAATCCGTTCAGCACCACCGTAT
TCAGTCATCAAATTCGAAGGAACGTCTTCTGTCAAATCAGAAAACTCTACTGTTAATAAA
CATGAATCGACGCCTTCGCCACAGCTCTCCTCCGTTAAGCTCGAAGCTACGCCACCAGAG
CCACAGCCTTACCGGCCTCGTGCTATTGCACAACCTCAACAAAGTTCTCATCCAGCTCTT
TCACCGGGACATTGGCCACAAGCGGCATGTATCAATGGTGTCAAGCCAGAACTCATTGGC
GGTCATTTTCCCCCACAACCGCTTGAACAAAAGGCAGGCATGCGAGGCTCAAACCAGTGG
CGAGGAGCCCCAGCTGTCATTATGGGTGAATCGGGTGGAGTAAGAACAATGTTTTGGACA
TTACCAGCTCCAACGGCCGGTAATGAACCAGCAGCAAGTGCCTCTCACACGGCCACTCCA
CCTACACCAGACCCCACGACGTGCAGTGAAGAATCCGCTGCAAGATTGCTGTTAAACCTT
GGTGGTGAATTAAGACGACCAAAGGGACCACCCTTAAATATGGAATTATTATGGGCAGGT
GATGTATCACAGCTGCCAGCTCATCAACAAATTCATGCGCTAAATTTAAGCGCAGCAGCG
GGAAGCGTTTCAGGAATAACCGGCGTCCCAAGTGCGAGCTCTTTAGTGCCGAGGCCAGAG
CTTAGAACTTATGCCCCTGAAACTGAAAGGGATGAAGATGAACAACCTATGATATGTATG
ATTTGTGAAGACAAAGCGACAGGTTTACACTACGGAATTATAACATGTGAAGGTTGTAAG
GGGTTCTTTAAAAGAACTGTGCAGAATCGGCGGGTTTACACGTGCGTAGCTGATGGTGGC
TGTGAAATCACGAAAGCTCAACGCAACAGATGTCAGTACTGTCGATTTAAAAAGTGTATA
GAACAAGGAATGGTATTACAAGCTGTAAGAGAAGATCGTATGCCGGGAGGACGTAACAGC
GGTGCCGTTTATAACCTATATAAGGTTAAATATAAGAAGCATAAGAAAGCAAATACAAAA
GCTGCGACAACTACGAGCCGAGCGTCGCCACCAGAAAAGCCTAAAGAACCAGTGCCTCCT
CTCCCACCCCACCTAGTTAACGGCACTATATTGAAGACTGCCCTAACAAATCCCAGCGAG
GTTGTACATTTAAGAGCGAGATTAGAAAGTGCTGTATCATCATCGCGAGATCGTGCAGTA
CCTTTAGAGCGGGCGTTACATATGATCCGAGCTCTAATCGACTGCGATGCCATGGAAGAC
ATTGCAACCGTCCGACATTTGCCTGACTTACTCCACGACACTTCCGAAATCGGCGATAAA
CTATGTAAAATAGGCGACTCAATTGTCCATAAAATGGTCGCATGGACGAAAAAGTTACCT
TTCATCATGGAAATACCGATGGAGATACATTCGAAACTCTTAATGGAGAAATGGCACGAG
ATATCAGTGTTGACGACGGCAGCGTATCAGGCAATGCACGGAAAACTTGCCCACGCGCCG
CCCTCGTCAGACCACGAGCACGATTTCATGCAAGAGGTGAACGCAAATCTGAGGACGCTG
CAGAGTTGCTTGACATCGCTCATGGGTAGACCCATCACGTTGGAACAGCTTCGGCTGGAC
GTGGGGCTGGTGGTGGAGAAAATGACCCAGATAACCTGCGTGTTCCGCAGAATACAGCTC
AGGATGGAAGAGTATGTCTGCTTGAAAGTATACATACTTCTCAATCAAGAAGTCGAGCTA
GAAAGTATTCAAGATAGGTACGTGCAGGTTCTACGTAGTTACTTGGAACACGCCGCACCC
CACCATCCCGGAAGACTGCAAGAGTTGTTCGCTCGGATACCTGAGATTCAAGCAGCAGCG
AATCTGTTACTCGAGAGTAAGATGTTCTACGTACCGTTCGTGTTGAACTCGGCCGAGATC
AGATAG
Protein sequence:
MTTFAFSRYRDFAESRGKLSASDRLGPEALDASAHALQLQTMTSTMGIMTLSRGPCDLDN
MSLFQDLKLKRRKVDSRCSSDGESAADTSTSSPDPGPPSPRMAEAGCSTPPHPPPVFDGG
GSPSPSPSCHPTVIRSAPPYSVIKFEGTSSVKSENSTVNKHESTPSPQLSSVKLEATPPE
PQPYRPRAIAQPQQSSHPALSPGHWPQAACINGVKPELIGGHFPPQPLEQKAGMRGSNQW
RGAPAVIMGESGGVRTMFWTLPAPTAGNEPAASASHTATPPTPDPTTCSEESAARLLLNL
GGELRRPKGPPLNMELLWAGDVSQLPAHQQIHALNLSAAAGSVSGITGVPSASSLVPRPE
LRTYAPETERDEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGG
CEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKANTK
AATTTSRASPPEKPKEPVPPLPPHLVNGTILKTALTNPSEVVHLRARLESAVSSSRDRAV
PLERALHMIRALIDCDAMEDIATVRHLPDLLHDTSEIGDKLCKIGDSIVHKMVAWTKKLP
FIMEIPMEIHSKLLMEKWHEISVLTTAAYQAMHGKLAHAPPSSDHEHDFMQEVNANLRTL
QSCLTSLMGRPITLEQLRLDVGLVVEKMTQITCVFRRIQLRMEEYVCLKVYILLNQEVEL
ESIQDRYVQVLRSYLEHAAPHHPGRLQELFARIPEIQAAANLLLESKMFYVPFVLNSAEI
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