New model in OGS2.0 | DPOGS208223  |
---|---|
Genomic Position | scaffold1089:+ 4114-12060 |
See gene structure | |
CDS Length | 1776 |
Paired RNAseq reads   | 488 |
Single RNAseq reads   | 1465 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006411 (2e-101) |
Best Drosophila hit   | vacuolar protein sorting 16A (2e-67) |
Best Human hit | vacuolar protein sorting-associated protein 16 homolog isoform 1 (2e-62) |
Best NR hit (blastp)   | PREDICTED: similar to vacuolar protein sorting vps16 [Tribolium castaneum] (7e-99) |
Best NR hit (blastx)   | PREDICTED: similar to vacuolar protein sorting vps16 [Tribolium castaneum] (5e-94) |
GeneOntology terms    | GO:0007041 lysosomal transport GO:0006886 intracellular protein transport GO:0008057 eye pigment granule organization GO:0005829 cytosol GO:0000046 autophagic vacuole fusion |
InterPro families    | IPR011046 WD40 repeat-like-containing domain IPR006926 Vps16, N-terminal IPR006925 Vps16, C-terminal |
Orthology group | ND |
Nucleotide sequence:
ATGTCAGCTTTATTAACAGCAGATTGGTTTCATCTAGATTCCTATTACAGGAAATTTGAT
TTGTATAACATGGTATGGTCAATGGACGAAGGCCTTGGCAACATGATTGTTAGTGGAGCA
CAGTATGGAGGTCCTATTGCTGTTGTTAGAGACAGAAAACAGTTTGTAAGGATTGTGACG
ACAGCTAAGCCCGTCATCACTATATATAACTGTGTTGGGAACATTATATCAAAGATTCTG
TGGAACAATGGAGTTTTAATACACATGGGCTGGTCGGACGGTGAACAGCTTCTATGTATT
CAAGAGAGTGGTGATGTTTTGATATATGATATGTTTGGGGCATACCAAAAGACATTCAGT
TTAGGGCAAGAAGTTAGAGATACAAAGGTCTGTAAAGCCCAACTATTTTCAAATCCCCAC
GGTAAAGGCCTCGCTGTCATAACAACAACAAACCGGATATTCTTATTGAGTAATGTATCT
GAACCTAAAATAAGAACAGTGCCTGAAATACCTAGAGCGAATGAACCGATCAGCTGTTGG
TGTGTCATCAGTTCTGACCCACGAGTTGCACCAAATATTGCTGTACTCGTATGTAGGGAT
AAGGAAGTGTATAGATGTCAGCTCGGTGAATCCAGACCTATACTTATGCGACCGGATATA
ACAAATGCCTTTACCCTAATTCTAACAATAGTGCCATCAGATAACGGTCGTCATGTAGCA
CTGTTCACTGACTCTGGTTTCCTCTGGCTCGGATCATCAGACTTCAAGAGTAAATACTGT
GAGATTGACACAGAGTATATAAAACAACCCAAAGAGCTGCTATGGTGTGGATCCCAAGCA
GTGATAGCACATTGGGATGACACAATGTGTATATACGGCCTTAATGGGACATCCGTGAAG
TACCCCTACGACGGACCCTTCCACCTCATACAAGAAAGTGACTGTGTGAGAGTTATATCG
GAAATGACACACGAGTTGATACAAAAAGTACCAGTAGTAGTGGAAAAGATATTCAGGATC
AATAGCACAGCGCCCGGATCGTATTTGGTTGAAGCTTCGAAACAATTCCAGCTGACGATA
GTTAACTTCAAACTGGCTCATTCTCTGTACATAAAGTACTGCGCGAGTCACAACAGAGAG
GCTCTGCGGAAGGTTTACGTGCAGGAGGACGATTTCCACGGACAGGCGACCACACACGTC
AGGGACGCCATCGAACAGAGCAATCCCGGAAGTGTAGAGGCATCCCTGATATCCGCTCGG
GAATGTTACAGGAAGGGCAGGAACGATCTTGGAGTTTCGATATGCGAAGAAGCTCGCAAG
CTCTGCAAGCAGCAATCAAGTCTGCAAGAGACGTATGGAGAGAGTTTTGTTGGACTCTCA
CTTCACGACACCGTGAAGAAACTTCTAGAACAGGGGGAAATAAAATTGGCTGATAAACTG
AGATCCGAATACAGGATGCCGGATAAAAGGTACTGGTGGCTGAGAATATTAGTGATGGCG
GATAACTATAAATGGGACGATTTAGAAAAGTTCTCCAAATCTAAGAAATCACCGTGCGGC
TATGAACCGTTCGTGGACGCTTGTCTCAAGTACGGGAAGAACGACGAGGCACTGAAATAT
CTATCGAAGTGCCGGGACGACATCAAAGTCAAATATTACGTCAAGGCCGAATTCTATGAA
GAAGCAGCTCAAGTAGCATTCGAACAAAAGGACGAGAGCGCGCTTTTGTTCGTACAAAAT
AAATGTCCTTCGTGTAATCTTAATAGCAGCCTGTAG
Protein sequence:
MSALLTADWFHLDSYYRKFDLYNMVWSMDEGLGNMIVSGAQYGGPIAVVRDRKQFVRIVT
TAKPVITIYNCVGNIISKILWNNGVLIHMGWSDGEQLLCIQESGDVLIYDMFGAYQKTFS
LGQEVRDTKVCKAQLFSNPHGKGLAVITTTNRIFLLSNVSEPKIRTVPEIPRANEPISCW
CVISSDPRVAPNIAVLVCRDKEVYRCQLGESRPILMRPDITNAFTLILTIVPSDNGRHVA
LFTDSGFLWLGSSDFKSKYCEIDTEYIKQPKELLWCGSQAVIAHWDDTMCIYGLNGTSVK
YPYDGPFHLIQESDCVRVISEMTHELIQKVPVVVEKIFRINSTAPGSYLVEASKQFQLTI
VNFKLAHSLYIKYCASHNREALRKVYVQEDDFHGQATTHVRDAIEQSNPGSVEASLISAR
ECYRKGRNDLGVSICEEARKLCKQQSSLQETYGESFVGLSLHDTVKKLLEQGEIKLADKL
RSEYRMPDKRYWWLRILVMADNYKWDDLEKFSKSKKSPCGYEPFVDACLKYGKNDEALKY
LSKCRDDIKVKYYVKAEFYEEAAQVAFEQKDESALLFVQNKCPSCNLNSSL