New model in OGS2.0 | DPOGS209601  |
---|---|
Genomic Position | scaffold44:- 309735-313413 |
See gene structure | |
CDS Length | 1338 |
Paired RNAseq reads   | 454 |
Single RNAseq reads   | 1089 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009461 (8e-18) |
Best Drosophila hit   | TNF-receptor-associated factor 4, isoform C (1e-136) |
Best Human hit | TNF receptor-associated factor 4 (4e-97) |
Best NR hit (blastp)   | PREDICTED: similar to tnf receptor associated factor [Tribolium castaneum] (7e-177) |
Best NR hit (blastx)   | PREDICTED: similar to tnf receptor associated factor [Tribolium castaneum] (7e-168) |
GeneOntology terms    | GO:0007391 dorsal closure GO:0009790 embryo development GO:0002168 instar larval development GO:0008063 Toll signaling pathway GO:0006952 defense response GO:0007165 signal transduction GO:0048102 autophagic cell death GO:0035071 salivary gland cell autophagic cell death GO:0046330 positive regulation of JNK cascade GO:0046529 imaginal disc fusion, thorax closure GO:0001654 eye development GO:0043065 positive regulation of apoptosis GO:0008270 zinc ion binding GO:0006911 phagocytosis, engulfment GO:0005515 protein binding GO:0045167 asymmetric protein localization involved in cell fate determination GO:0045179 apical cortex GO:0005737 cytoplasm |
InterPro families    | IPR002083 MATH IPR001293 Zinc finger, TRAF-type IPR008974 TRAF-like IPR012227 TNF receptor-associated factor TRAF IPR013323 Seven In Absentia Homolog-type IPR013322 TRAF-type |
Orthology group | MCL16454 |
Nucleotide sequence:
ATGTACAAATGGAAACGTAATCATTCAGTAAGGAGCCCTTGCTGCGAGCGCTTGTCTCGT
CTACAATTGATAGCGCGCGAAAAACAAATCGTCGGCCATTTTGCATATTTTCTAACGATG
TGCTCCATATTCGAACGTGCGATATATCCCGATCCAGAGTCGGAGAAGGCTATAATGGGT
TCGGTGGTTTACTGCATCCACCACAAGGAAGGGTGCCAGTGGTCGGACGAGCTCCGCAAA
CTCAAGGCGCACCTGAACACCTGCAAGCACGATGCTGTGCTGTGTGCAGCTCAGTGCGGG
GCGATGATCCCGAGGGTGTTGATGCAGGACCACCTGCGTTACACCTGCCCCCGGAGACGC
GCCAACTGTGAACATTGCGGGAAGGAATTCTCCGGTAGCGCTCTGGAGGAGCACCAAGGA
AATTGCGGTCATGAGCCGGTGTACTGCGAGAACAAGTGCGGGGCCAAGGTCCAGCGGCGG
CACACCACGCAGCACGCCGCGCAGCACTGCAGCAAACGATTGGTGCCCTGCAGACACTGC
GGCCAGCGGTATACACAGGATACAGTGTCAGCTCATGGCGCGTTATGTTCCCGGGCCCCG
GTGCCGTGTCCCCAGCGGTGCGCGGCGGCCCCGGCCCGGGACGAGCTAGACGTTCACCTC
CGGGAACACTGCACGGCCACCGCCGCCGTCTGCCTCTACAGAGACGCTGGCTGTCGGTTT
AAGGGCACGAGACAGGCTCTGGAACGTCACACGGAAGAGAGTGCCCAACAACACTTAGCC
CTGGTGTCAGCGCTGGCGACGCGTCAGGCTCGGCAGCTGGATTCGCTAAGGGCGGCCGTG
GCCAGGCTCGCCGTGAACTGTAGCGGAGCCCTGGTTTGGCGCGTCACGGACTGGGCCGCC
AAGATGGCCGACGCTAAGACCAAGGACGGCGTCGAGCTCACCTCACCCGCCTTCTACACC
AGCCAGTACGGATATAAACTACAGGCGACGTTGTTCCTGAACGGTAACGGCGCAGGCGAG
GGGACGCATATTTCCGTGTACATCAAGATCCTGCCGGGCGAGTACGACGCTCTCCTGCGG
TGGCCGTTCGCCCACTCCGTGTCCTTCACGCTGTTCGACCAGAGCTCGAGCCCGGAGCGC
GCCTGCAACATCGTGGAGAGCTTCGTGCCGGACCCCACCTGGAAGAACTTCCAGCGGCCG
TCCAAGGAGCCGGACGCGCTCGGCTTCGGCTTCCCGCGCTTCGTGTCGCACGAGATGCTC
AAGAAGAGGAACTTCGTCAAGGACGACGTCATGTTCCTCAGGGTCAAGGTCGACCCCAGC
AAGATCGTCGCCGTATAG
Protein sequence:
MYKWKRNHSVRSPCCERLSRLQLIAREKQIVGHFAYFLTMCSIFERAIYPDPESEKAIMG
SVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAQCGAMIPRVLMQDHLRYTCPRRR
ANCEHCGKEFSGSALEEHQGNCGHEPVYCENKCGAKVQRRHTTQHAAQHCSKRLVPCRHC
GQRYTQDTVSAHGALCSRAPVPCPQRCAAAPARDELDVHLREHCTATAAVCLYRDAGCRF
KGTRQALERHTEESAQQHLALVSALATRQARQLDSLRAAVARLAVNCSGALVWRVTDWAA
KMADAKTKDGVELTSPAFYTSQYGYKLQATLFLNGNGAGEGTHISVYIKILPGEYDALLR
WPFAHSVSFTLFDQSSSPERACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRFVSHEML
KKRNFVKDDVMFLRVKVDPSKIVAV