| New model in OGS2.0 | DPOGS207659 |
|---|---|
| Genomic Position | scaffold975:+ 39949-43238 |
| See gene structure | |
| CDS Length | 1491 |
| Paired RNAseq reads | 456 |
| Single RNAseq reads | 1490 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010510 (0.0) |
| Best Drosophila hit | KH1 (1e-107) |
| Best Human hit | probable ATP-dependent RNA helicase DDX28 (1e-58) |
| Best NR hit (blastp) | GM16768 [Drosophila sechellia] (3e-124) |
| Best NR hit (blastx) | GM16768 [Drosophila sechellia] (8e-113) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0004386 helicase activity GO:0005575 cellular_component GO:0016063 rhodopsin biosynthetic process GO:0003676 nucleic acid binding GO:0005524 ATP binding |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL14817 |
Nucleotide sequence:
ATGTCTAAGTTACGAGAATGTTTGAAACTGTCTTATTGTAGATATTACAGTGCTCAACAA
GTTAAAAAGAAATTGCCTATTATAACATGTAAACGTCCCGAATTTAATCATTATGAAGGA
CAAACCTATGCTAAGTTTGATGGTATTAAACTTGCCTCACAAGGTTGGTTGCATCCGAAA
TCAAAAAACGACTATTTTATAGTATATGGAGACGCAAATAAAAAAAATCAAAAAGAAGAA
AATGTAGTTTACAAGAAAAGTTTCGAAGAAATTGGCTTGTGTGTAGAACTTAAAGAGGTT
ATGTCTCGACTCGGATATGAACTGCCAACTGCGATTCAGGCTAGGTCATTTTCGCCTATA
ATCCAGGGATATAATACTGCTTTGACCGCAGAGACAGGCTGTGGAAAGACTTTGGCCTAT
TTATTGCCAGTACTGCAACACATACTTGAATGGAAGAATCATGTAAAGGAAGATTTTAAT
AGTCCACTAGCTGTCGTTATCACACCAAGTAGAGAGCTAGCAACACAAATAGCCGAAGTT
GCCGAGAATGTTTGTCAGAATCTTAACATTAATATATCCACACTGGTTGGAGGCAAGACC
AAGCAGAAGATGATGAATCCTCCGATAGAATACAGCGATTTACTTATAACAACTTTAGGA
GCCTACAGCAAGTTAGTCACAACCGGTATATGCAAGATACATAATGTGCATCACATTATA
TTGGATGAAGCGGACACATTACTTGATGATAGTTTCATTGATAAACTATCTTTGCTGTTG
AAGAAATTTCCTATTCAATTCAAAGTAGATATAAAGAATCCTCCATCTGGGTGTCAAGTT
ACACTGGTCAGTGCAACATTACCTCATGAGTTACCGGAAGCAGTGAACTCCTTCATGGAC
CCACAGTCATTACGAACAATCACTACAGATAATGTCCATCGTATTCTACCCCATGTGCCT
CATAAGTTCATCCGTCTCGGCAAAGCCCAGAAACCTCTTGAACTGTTGAAACTAGTGCAA
GCGGATGTTAATTTACAGAGGCCAGTTATGATATTCTCTAACAAGACGTCGACTTGTGAT
TTCTTAGCGATGTTCCTGAATGAGAATAACATTGAATGTATAAATATTAACGGACGAATG
GCTGTTCCACTGAAGATGGGGAAGTATGAAATGTTCAAAAACGGTCAGGTCAATGTACTC
TCGTGCACTGATATTGCGTCACGTGGCTTGGATACTTTGAGGACTCGACACATCATTAAC
TACGATTTTCCTTTGTACACATCCGATTACATCCATCGTTGCGGAAGAACAGGTAGATTG
GGTTCATCTAATGATTGTTCCATCACTAATTTCGTGGCTTGGCCAAGAGAGATACAACTC
GTGCAAAAAATAGAGACCGCTCTGAGAAAACACGCAGCTTTACCAAATGTCAATGCCAAC
ATCAAACGTCAGATTGAAGACAGAATATCTAGAATGACGTCGGCTCTATAA
Protein sequence:
MSKLRECLKLSYCRYYSAQQVKKKLPIITCKRPEFNHYEGQTYAKFDGIKLASQGWLHPK
SKNDYFIVYGDANKKNQKEENVVYKKSFEEIGLCVELKEVMSRLGYELPTAIQARSFSPI
IQGYNTALTAETGCGKTLAYLLPVLQHILEWKNHVKEDFNSPLAVVITPSRELATQIAEV
AENVCQNLNINISTLVGGKTKQKMMNPPIEYSDLLITTLGAYSKLVTTGICKIHNVHHII
LDEADTLLDDSFIDKLSLLLKKFPIQFKVDIKNPPSGCQVTLVSATLPHELPEAVNSFMD
PQSLRTITTDNVHRILPHVPHKFIRLGKAQKPLELLKLVQADVNLQRPVMIFSNKTSTCD
FLAMFLNENNIECININGRMAVPLKMGKYEMFKNGQVNVLSCTDIASRGLDTLRTRHIIN
YDFPLYTSDYIHRCGRTGRLGSSNDCSITNFVAWPREIQLVQKIETALRKHAALPNVNAN
IKRQIEDRISRMTSAL