New model in OGS2.0 | DPOGS211838  |
---|---|
Genomic Position | scaffold306:- 94884-97473 |
See gene structure | |
CDS Length | 1155 |
Paired RNAseq reads   | 1861 |
Single RNAseq reads   | 6155 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006022 (2e-109) |
Best Drosophila hit   | La autoantigen-like, isoform A (9e-63) |
Best Human hit | lupus La protein (2e-55) |
Best NR hit (blastp)   | GK18125 [Drosophila willistoni] (8e-71) |
Best NR hit (blastx)   | RecName: Full=La protein homolog; AltName: Full=La ribonucleoprotein; AltName: Full=La autoantigen homolog (2e-72) |
GeneOntology terms    | GO:0008098 5S rRNA primary transcript binding GO:0003718 RNA polymerase III transcription termination factor activity GO:0005634 nucleus GO:0003729 mRNA binding GO:0006396 RNA processing GO:0030529 ribonucleoprotein complex GO:0000166 nucleotide binding |
InterPro families    | IPR000504 RNA recognition motif domain IPR006630 RNA-binding protein Lupus La IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR012677 Nucleotide-binding, alpha-beta plait IPR014886 RNA-binding motif IPR002344 Lupus La protein |
Orthology group | MCL14695 |
Nucleotide sequence:
ATGACTGAAGAAAAAGAGGTACAAGCTGAAAATAACGAGAGTCAAGATAAAGAAAATAAA
AATGAGGATGAACAAAACAAAAATGCAGAAGTTGACAGTATAGAAGAAAAATCTGAATTG
GACAGTAGTATAATTCGTCAAATCGAATACTATTTTGGTGACCTTAACCTACCAAGAGAC
AAATTTCTCAGAGAGCAAGTCAAGCTTGATGATGGCTGGGTGCCACTGGAAGTGTTGACC
AGATTTAACAGACTTGCAAAACTGACGACTGACATCGGAGTTATTGCAAATGCTATCAGC
AAGTCTACATCAGGTCTTCTAGAGATATCTGATGACAATCTAAAAGTCAGACGGAATCCT
GAATTGCCGATACCTGAGATGAATGAAGAAAGACGTAAGGAGTTAGTTTCTAGAACAATC
TATGCTAAAGGATTCGGCAAAGACGCCTCCCTCGATGACATACTAAAATATTTCAAGCAG
TTTGAAGAAGTGGAAAACATTATTATGAGGAAATATCAAGATAGGAAGACAAAGACATTC
ATTTTTAAGGGTTCAGTATTCGCTACCTTCAAGACAAAAGATCAGGCAGATAAATTTATG
GAAACAAAAGATTATAAATTTAATGATACCGACCTACTGGTTATGTGGCAAGACGCATAC
GTAGAGAAAAAGAGGGAGGAATATGCAAAATTGTCAGCAAACAAAAAGAATAAAAACAAA
AATGGAGAATCCGAGCAAAAAGAGAAAAGTGAATTCAAACTGCCGACCGGAACAGTGCTT
CACTTCAGCCAGGGTCATGACAAAATGACCAGAGAGGATGTCAAAGAAGTCCTCACTCCA
TTAGGTGGGGAGGTGGCTTTTATCAGTTTTAAGGTGGGAGATACAGAGGGTTGGGTCCGT
CTGGCTAATGAGGGTGATGCTAAGAAAGTAGCCGAGAAGATTCCGGATGGTAAAATCAAG
ATCGGCGAATCTGAGGTCGTTTTCCGCGTATTAGAAGGGGAAGAAGAGAAGAATTACCTC
GATAAGACTATAGAAGAAATGTCAAAGAGACGACAGAATATGAAAAAACAGAAGAAAGGT
GGCAAACCACAGTACAGGAAAAGGAAACAAGATAATCACGACGATGCACCAAGAGCAAAA
ACAAGAGCAAGCTAA
Protein sequence:
MTEEKEVQAENNESQDKENKNEDEQNKNAEVDSIEEKSELDSSIIRQIEYYFGDLNLPRD
KFLREQVKLDDGWVPLEVLTRFNRLAKLTTDIGVIANAISKSTSGLLEISDDNLKVRRNP
ELPIPEMNEERRKELVSRTIYAKGFGKDASLDDILKYFKQFEEVENIIMRKYQDRKTKTF
IFKGSVFATFKTKDQADKFMETKDYKFNDTDLLVMWQDAYVEKKREEYAKLSANKKNKNK
NGESEQKEKSEFKLPTGTVLHFSQGHDKMTREDVKEVLTPLGGEVAFISFKVGDTEGWVR
LANEGDAKKVAEKIPDGKIKIGESEVVFRVLEGEEEKNYLDKTIEEMSKRRQNMKKQKKG
GKPQYRKRKQDNHDDAPRAKTRAS