| New model in OGS2.0 | DPOGS204549 |
|---|---|
| Genomic Position | scaffold15055:- 2432-3679 |
| See gene structure | |
| CDS Length | 921 |
| Paired RNAseq reads | 165 |
| Single RNAseq reads | 586 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004504 (2e-106) |
| Best Drosophila hit | Mtr3 (4e-26) |
| Best Human hit | exosome complex exonuclease MTR3 (1e-19) |
| Best NR hit (blastp) | mRNA transport regulator 3 [Bombyx mori] (2e-82) |
| Best NR hit (blastx) | mRNA transport regulator 3 [Bombyx mori] (6e-87) |
| GeneOntology terms | GO:0000175 3'-5'-exoribonuclease activity GO:0006396 RNA processing GO:0003723 RNA binding GO:0000178 exosome (RNase complex) GO:0004527 exonuclease activity GO:0006364 rRNA processing GO:0005634 nucleus GO:0016787 hydrolase activity GO:0004518 nuclease activity GO:0005737 cytoplasm |
| InterPro families | IPR020568 Ribosomal protein S5 domain 2-type fold IPR001247 Exoribonuclease, phosphorolytic domain 1 |
| Orthology group | MCL13111 |
Nucleotide sequence:
ATGCCACTGGATTATAGAAGATTTAATGGACCAGAAGACAGTGTATCGTACAGGCGTTTC
ACAGAGGATTATACGAAGGATTATAAGCAATTTCTTAAGGAATTAATCGACGAGAATGGA
CGTCGGAAAGGAGGGCGCGAAATGGATGAAGCGCGTACCTTGTTTGCTAGAACGGGAATG
ATATCACAAGCTAAGGGATCATCTTATATAGAACTAAAGAGAACAAAAGTCGCATGTTCT
GTGTTTGATCCAAGGGAAATTGTACACCAGAATGAATACAGTACCCTTGGACAGTTGTAT
TGTGAAGTTAAATATGCACCTTTCTCATGTCGGGGAGAACGGAAAGCTCTCGTTCCAGAT
TCAGATGAGAGGGCATTATCAGTGGCTCTCAAAAAGGCCTTAGAACCTGCTGTTTGCAGA
CATCTGTTCCCAAATTATCAGATCGACATATTCATATACATTCTAGAAAATGATGGAGCA
TGTCTGCCAGCAGCAATAAATGCAGCGGGATTGGCTTTATCAGATGCAGCTGTACCAATG
TATGATATTATAACCGCTAGTTCTCTCGCTATAAGCGGAGACAAGGTGTTTGTCGACCCT
ACAGATGATGAGGAACAATTAGCGATCAGAGACCACGAAGGTGTAAACCACGGTGTGATC
ACTATGTCAATGTTGCCGGAGTTACAACAAGTGTCAGATTACCGACAGATTGGCTCGATG
GATGCCGATTGTGTTTTAAATGCACTTAGCATTCTTGAAAAGGAATGTAAGAAAATTGTT
CCATATGTACAGAGAGTTCTCGTGCAGAATGCCATTAATAGTTTCGAACAACAAAAAAAG
TTGGAAGCGCAAGCAAAGGAGAGAGAGGAAGCCTTGAATGCAAAAATGGAAGTCTGGAAA
TCTATATTAAATGTTGGATAG
Protein sequence:
MPLDYRRFNGPEDSVSYRRFTEDYTKDYKQFLKELIDENGRRKGGREMDEARTLFARTGM
ISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYCEVKYAPFSCRGERKALVPD
SDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGACLPAAINAAGLALSDAAVPM
YDIITASSLAISGDKVFVDPTDDEEQLAIRDHEGVNHGVITMSMLPELQQVSDYRQIGSM
DADCVLNALSILEKECKKIVPYVQRVLVQNAINSFEQQKKLEAQAKEREEALNAKMEVWK
SILNVG